Corynebacterium ulcerans 05146: Cul05146_0398
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Entry
Cul05146_0398 CDS
T03420
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cuz
Corynebacterium ulcerans 05146
Pathway
cuz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cuz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cul05146_0398 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuz03021
]
Cul05146_0398 (rpoC)
03400 DNA repair and recombination proteins [BR:
cuz03400
]
Cul05146_0398 (rpoC)
Enzymes [BR:
cuz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cul05146_0398 (rpoC)
Transcription machinery [BR:
cuz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cul05146_0398 (rpoC)
DNA repair and recombination proteins [BR:
cuz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cul05146_0398 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIU90983
LinkDB
All DBs
Position
397884..401894
Genome browser
AA seq
1336 aa
AA seq
DB search
MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITGVDEEARHSDQTTLEAEMLLEKKDVEADAESEIAERAQKLEED
LAELEAAGAKADARNKVQKAADKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELREIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKTEDEIGGQ
GAYQPATETGPATGVYSSYAEALMARDRGVLGLQAKIQVRISHLRPPTDVEAEQFPEGWE
QGQTWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGSNKILLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEAAKIERKYWEQGALTERE
RYDRLVELWKEATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTKQGIRVPLAVEVKDAQGNVTGYTGHSLIETSVAGRVASVDVKDSEGNVLVPAGENL
TDQLIEKLIAAGIAEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLEDEGNFYTL
TINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLSEGDHVNVGDRLLRGPADP
HDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG
TLVDLSEAKAANAEAIAAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI
NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGY
GEFTGASVPLDEAYDL
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcaacttcttcgacgagctccgcatcggcctggctaccgccgacgacatt
cgtcgttggtccaaaggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacggcctcttctgcgagcgaattttcggtccaacccgtgactgggagtgt
gcttgtggtaagtacaagcgcgtccgttacaagggcatcatctgtgagcgctgtggcgtt
gaggtgaccaagtccaaggttcgtcgtgagcgcatgggccacatcgagctggctgcgcct
gtgacccacatttggtacttcaagggcgttccttctcgcctcggctacctattggacctg
gctccaaaggaccttgagcgcatcatctactttgctgccaacatcatcactggtgttgac
gaggaagctcgccacagcgaccagaccactcttgaggcagaaatgcttttggagaagaag
gacgttgaggctgacgcagagtctgagatcgcagagcgcgctcagaagctagaggaagac
cttgccgagctcgaagcagcaggcgcaaaggctgacgctcgcaacaaggtgcaaaaggct
gcagacaaagagatgcagcacatccgcgagcgtgctgagcgtgagatcgaccgtcttgag
gagatctggcagacctttatcaagcttgctcctaagcagatgatcatcgacgagaccatc
tatgaagagctcgttgatcgctatgaggattacttcaccggtggtatgggcgcggaggct
atccaaacccttatccgcaacttcgacctcgacgctgaggcagaagagctgcgcgagatc
atcaacaacggcaagggccagaagaagatgcgtgctctcaagcgcctcaaggtcgttgct
gcattccagcgctcgggcaatgacccagctggcatggtgctcgactgcattccggtgatc
ccgccggagctgcgcccgatggttcagcttgatggtggccgttttgctacctccgacctg
aacgacctctaccgtcgtgtgatcaaccgtaacaaccgcctcaagcgcatgatcgatctt
ggtgctcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtccgtcgacgcg
ctattcgacaacggccgtcgtggtcgccccgtcactggtcctggcaaccgtcctctgaag
tccctgagcgatctgctcaagggtaagcagggtcgtttccgtcagaacctgctgggtaag
cgtgtcgattactctggtcgttccgttattatcgttggtccacagctgaagctgcatgag
tgcggtcttcctaagctcatggctcttgagctcttcaagccgtttgttatgaagcgcctc
gtggaaaacgattacgcgcagaacatcaagtcggctaagcgcatggttgagcgtcagcgc
cctgaggtgtgggacgttctggaagaggcaatttccgagcatcctgtgatgcttaaccgt
gcacctaccctgcaccgcctaggtatccaggccttcgagcctaagctcgtcgagggtaaa
gctatccagctgcacccgcttgcctgtgaagccttcaacgccgacttcgacggtgaccag
atggctgtgcacttgccactgtctgctgaggcgcaggctgaggctcgtatcctcatgctt
gcttctaacaacatcctctccccggcatccggtaagccacttgccatgccacgtctggac
atggtgaccggtctttattacctcaccatggacaagactgaggatgagatcggcggacag
ggtgcataccagcctgctaccgaaaccggaccagcaaccggtgtgtactcctcctacgct
gaggctcttatggctcgggaccgtggtgttcttggcctgcaggctaagattcaggtgcgc
attagccacctgcgtcccccgactgatgtcgaggcagaacagttcccagagggctgggag
caggggcagacctggttggctgataccacccttggtcgcatcatgttcaacgagctcttg
ccgtggaactacccataccttgagggcgttatggtccgtaagggtggcggctccaacaag
attctcttgggcgacgtgattaatgacctcgctgcgacctacccgatgattactgtcgcg
cagacgatggacaagatgaaggatgccggtttctactgggcaacccgaagcggcgtgacc
atcaccatgtctgacgtgctcgttcttcctaacaaggaagagatccttgaccgctatgag
gccgaggctgcaaagatcgagcgcaagtactgggagcagggtgctctgaccgagcgcgag
cgctacgatcgtctggttgagctctggaaggaggctaccgacgaggttggtaatgccgtc
gagaagctctatccggacgacaacccgattcctatgatcgtgaagtccggtgctgccggt
aacatgcgtcagatctggaccctggccggcatgaagggcatggttgtgaactcaaagggt
gactacatcacccgaccgattaagacttccttccgtgaaggcctgtcggttcttgagtac
ttcaacaactctcacggttcgcgtaagggtcttgccgataccgctctgcgtaccgctgac
tcgggttacctcacccgtcgtctggtggacgtcgcgcaggacgttatcgtccgcgaggac
gactgtggcaccaagcagggcattcgtgtcccattggctgtcgaggttaaggatgctcag
ggcaacgtcaccggttacaccggacacagcctcatcgagacctctgtcgctggccgtgtg
gcttccgtcgacgtcaaggattctgaaggcaacgtcttggtgccggctggtgaaaacctc
accgaccagctcatcgagaagctcatcgctgcgggtatcgcagaggtcaaggttcgctct
gtgcttacctgccagactccgaccggcgtgtgcgctaagtgctatggcaagtccatggct
accggcaagctcgttgatatcggagaagcagtgggtattgtcgctgctcagtccattggt
gagcctggtacccagctgacaatgcgtacgttccaccagggtggtgtcggtggcgacatt
accggtggtctgcctcgtgttcaggagctcttcgaggctcgtgttcctaagaaccgtgct
ccgattgcttctgttgcaggtaccgtccaccttgaggatgaaggcaacttctacaccctc
accatcaacccagatgatgggtctgatgttgtggtctacgagaagctttctaagcgtcag
ggtctggctaccgttcgggttcctatggagtccaaccctggtgccatgatcgagcgcacc
ttgtcagagggcgaccacgtgaacgtgggcgatcgtctgctgcgtggtcctgctgatccg
catgacgtacttgaggttcttggccgccgtggtgttgagcagcacctcgtcgacgaggtt
caggacgtttaccgtgcacagggtgtggctatccacgataagcacatcgagatcatcatc
cgtcagatgctgcgtcgtggaaccgtcatcgagtccggatcgactgagttcctcccaggt
actctcgttgatctttcggaggctaaggccgctaacgccgaggctattgccgctggtggt
cagcctgctgagctccgttcggagatcatgggtatcaccaaggcatcgctggctaccgag
tcgtggctgtccgccgcgtccttccaggagaccacacgcgtgcttaccgacgccgccatc
aacaagcggtccgataagctgattggtctcaaggagaacgtgatcatcggtaagctgatc
ccggccggtaccggtatttcccgttaccgcaacatctctgttaagccgactgaggcagcc
cgcaatgcggcttactcaatcccgacttatggagactccatctatggcgatgatggctac
ggtgagttcaccggtgcctccgtgccgctggatgaggcctacgacctctaa
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integrated database retrieval system
