Corynebacterium ulcerans 05146: Cul05146_0921
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Entry
Cul05146_0921 CDS
T03420
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cuz
Corynebacterium ulcerans 05146
Pathway
cuz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cul05146_0921 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuz03019
]
Cul05146_0921 (deaD)
03009 Ribosome biogenesis [BR:
cuz03009
]
Cul05146_0921 (deaD)
Enzymes [BR:
cuz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cul05146_0921 (deaD)
Messenger RNA biogenesis [BR:
cuz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cul05146_0921 (deaD)
Ribosome biogenesis [BR:
cuz03009
]
Prokaryotic type
rRNA helicases
Cul05146_0921 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
AIU91499
LinkDB
All DBs
Position
932609..934633
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AA seq
674 aa
AA seq
DB search
MSITDDATGGANEPDEKILSESQDNSQVDEGGITLDDVIADVDDSRVANTSEDTGSAQEA
DSDSNDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAF
ALPILSRINVKKRHPQALVLAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLS
GLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPAD
KQVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRIL
EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILV
ATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI
ERATNAELIEMDLPTVDEVNESRKAKFADSITESLEDSQVAIFRNLIKSYAEEHDTPLED
IAAALATQARAGSEFLMKEPPPEKRRERRDRFDRDDRRGDRRDRGERRDRGDRGSRFERS
GDMAVYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIAVDHTLVELPKGLPQSVFD
NLRDTRISGQLINIEKDNGRPGRRDDYRGGDDRRGGDRRDDRRGGYRRDRRDDRRDDRRG
DRRDRGDRRDRYRG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgatgacgccaccggcggcgctaacgagccggatgagaagattttgtcg
gaatctcaggacaattcgcaggtagacgaaggcggcatcacacttgatgatgttattgcc
gatgtagacgactccagggttgcgaacacttctgaggacaccggctccgcacaagaagcg
gacagtgacagtaacgatggctttgaggctttgggcctcccagacgcaatccttaaggca
gtcgccaaggttggctttgaaacgccgtcgcctattcaagcgcagaccatcccagtcctc
atggagggacacgatgtgatgggcctggcacagacgggtacgggtaagaccgctgcgttt
gccctcccgatcctttcccgtatcaatgtgaagaagcgccacccgcaggcgctggtcctt
gctcctactcgtgagcttgcacttcaggttgctgactctttccaatcatttgcagaccac
ctcggtgacattcatgtcctaccgatttacggtgggcaagcatatggtattcagctgtca
ggcctccgtcgtggtgcgcagattatcgtgggtactccaggtcgtgttattgaccacctg
gaaaagggatcactcgatatttccaacctgaattatctcgttcttgacgaggcagatgag
atgctcagtatgggcttccaggaagatattgagcgcattcttgaggacactcctgctgac
aagcaggttgctctgttctccgcaacgatgcctaatggcatccgccgtttgagcaagcag
tacatgaaggatcctcgcgagattcaggtgaagtccgagacccggaccaacaccaacatc
acgcagcgattcctgaacgttgctcaccgcaacaagctggatgctttgactcgtatcctt
gaggttacagagtttgaagccatgatcatgttcgtgcgtacaaagcacgaaactgaagag
gtcgcagagaagctgcgagctcgtggtttctctgccgctgccatcaatggtgacatcgcg
caggcacagcgtgagcgtactgtggaccagcttaaagatggtcgactagacattcttgtg
gctacagacgtagcagcgcgtggtctagatgttgagcgtattactcacgtgttcaactac
gacattcctaatgacactgagtcttatgttcaccgtatcggacgtactggccgtgccgga
cgtagcggtgaggcgattctctttgttaccccacgcgagcgtcgtatgctgcgttccatc
gagcgcgctactaacgcagagctcatcgaaatggatcttcctacggtcgatgaggtcaac
gagtcccgtaaggcaaagtttgcagactcgattacggaatcgctagaagattcccaggtt
gcgattttccggaatctgatcaagtcctacgcagaagagcatgacactccgctcgaagac
attgctgctgctttggctacccaggcccgtgctggtagtgagttcttgatgaaggaaccg
ccaccagagaagcgtcgtgagcgtcgtgatcgctttgaccgtgatgatcgtcgtggtgac
cgccgcgatcgcggtgagcgtcgtgaccgcggtgaccgtggctctcgctttgagcgttcc
ggcgatatggctgtgtaccgccttgcggtgggcaagcgtcagcacgttcgaccaggtgct
atcgttggtgcactggcaaacgagggtggactcagcaacaaggactttggccgtatcacc
attgctgtggatcacactttggtggagcttcctaaggggcttccacaatccgtctttgat
aatctgcgcgacacccgtatctcgggtcagctgattaacatcgagaaggacaacggacgt
ccgggccgtcgcgatgactaccgtggtggcgacgaccgtcgcggtggagatcgcagagac
gaccgtcgtggtggctaccgtcgtgatcgcagggatgaccgccgtgatgatcgtcgtggc
gaccgccgcgatcgcggtgaccgtcgtgaccgctaccgcggctag
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