Corynebacterium variabile: CVAR_0546
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Entry
CVAR_0546 CDS
T01594
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cva
Corynebacterium variabile
Pathway
cva03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CVAR_0546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cva03400
]
CVAR_0546
Enzymes [BR:
cva01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CVAR_0546
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CVAR_0546
DNA repair and recombination proteins [BR:
cva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CVAR_0546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AEK35896
UniProt:
G0HC41
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All DBs
Position
628844..629611
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AA seq
255 aa
AA seq
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MSVVSPQGRFATEASLLDGSVLTDAEAWGKHLFVHFTAGTVHIHLGLIGTLQFEPLAVPR
GQVRLRIADDTVAADLRGPQRCALVTPVEEDAAVAKLGVDPLRVVGGGTPAGELNARKLE
TALAKTRRSSKPVGALLMDQALYAGVGSIYRTEVLFRLGIDPTRPGKSLTTAELDDIWSD
MVDLMTYGEVAGRIDTVRPEHTPEAMGRPPRKDDHGGEVYVYRRAGLPCLVCGTPVETGE
MAGRKIYWCPVCQRG
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggtggtgtcgccacaggggcggttcgccaccgaggcgtccctgctcgacgggtcg
gtgctcaccgacgccgaggcctggggaaagcacctcttcgtgcacttcacagcgggcacg
gtccatattcacctcggcctgatcggcacgctgcagttcgagcccctcgccgtcccgcgc
gggcaggtgcggctgcgcatcgccgatgacacggtcgccgccgacctgcgcggcccgcag
cggtgtgccctggtcaccccggtcgaggaggacgccgcggtcgcgaaactcggtgtcgac
ccgttgcgcgtcgtcggtgggggcaccccggccggggaactcaacgcacggaagctggag
acggcactggcgaagacccgacgctcgtcgaagcccgtcggggcgctgctcatggaccag
gcgctctacgccggtgtgggcagtatctaccgcaccgaggtgcttttccggctgggcatc
gatccgacgcgtccggggaagtccctgaccacggcggagctggacgatatctggtcggac
atggtcgacctcatgacctacggcgaggtggcaggacggatcgacaccgtccgcccggag
cacacgccggaggcaatggggcgtccgccacgcaaggacgaccacgggggagaggtgtac
gtgtaccgacgcgccgggttgccctgcctggtgtgcgggacgccggtcgagacgggggag
atggcagggcggaagatctactggtgtccggtgtgccagcggggttga
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