Corynebacterium variabile: CVAR_0920
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Entry
CVAR_0920 CDS
T01594
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cva
Corynebacterium variabile
Pathway
cva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVAR_0920 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cva03019
]
CVAR_0920 (rne)
03009 Ribosome biogenesis [BR:
cva03009
]
CVAR_0920 (rne)
Enzymes [BR:
cva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CVAR_0920 (rne)
Messenger RNA biogenesis [BR:
cva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CVAR_0920 (rne)
Ribosome biogenesis [BR:
cva03009
]
Prokaryotic type
rRNA processing factors
CVAR_0920 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
S1
Motif
Other DBs
NCBI-ProteinID:
AEK36273
UniProt:
G0HCB1
LinkDB
All DBs
Position
1042116..1046060
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AA seq
1314 aa
AA seq
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MAKTSQELAAAAAGITIEDMGEKVRVHALAKALDVPSAELVQVLTAQGIEGKRATSTLPK
AEVGEFLTALTAAGAPAETAKKAPAKRTRKAAPKKSAATKSTAKKAPATKTATKDVPAED
APVDATAAEKNTDAPAETAKKAPAKRTRKTTAKKAAPKKDESQQPEATTAEPKKSRARKA
PAKKTATTQTAAKKEEPTTPETPEVAEPSAEEKSTTKTTSRRPRRGRKATAAAKAVATED
KSDQADKAEKAEPSVQPTAATAESSADTVDELIDRIAGSVEAPEDAPKAEKKAARKTETA
QATPAPETESPRPVRRRVVRRVGSRSAASDAELLRSRKAEQRRAAEAVERTTGNTDQQAE
QAGDSGSSENSRDNRASSQDSGDRSQRRGRRGRGRGRRDQDRQNQSDNRNEEVTQASETS
ETVDRAPEAPEAPLEPADDHGVPGDLPVLTEGADVVDEPVKLRGSTRLESKKRWRQEQGH
DKKKVVSKAEFLARRENVDRSMVVRDSERSDHPGMTTQVGITEDGMLVEHFVTSETQSSI
IGNIYLGRVQNVLSSMEAAFVDIGTGRNAVLYAGEVDWRNKHLHTRTRRIEAALKPGDQV
LVQAIKDPLGHKGARLTNRLSFAGRYLVYVPGGKTQGISRKLPESERKRLKDILGRVVPD
NGGTIIRTAAEGVSEELIAEDVNRLHQRWLDIQDAEEKARARKGSHPVTMYEEPNMLVKV
IRDIFNEDFNELVVDGEKSWAVVRDYVHRIAPDLESRVVRYHPEQHGGRDVFEDRQLDEQ
LAKALSRKVWLPSGGYLIIDRTEAMTVIDVNTGSFVGSGGNLEETVTLNNLEAAEEIVRQ
MRLRDMGGMIVVDFIDMVLPENRDLMLRRLSEFLGRDRTRHKVSEVTSLGLVQMTRKRLG
TGLLETFSTECPTCEGRGVIIHDDPVEHVEEEDGHHHERRDHGRRSEKRQARDQQETRRR
HEKNREDATSDHPEKIGQKEAPAKESQDAKEVKEDKSEVEQQRRSRRTRRGSRAGGQVAE
KAPEKAQEQSRPKTESTVEPKAEFKAESEAAPEHSGESQGARRGRRRVVRSNETGHQDEP
RRDHSSARDARDDRRSHGAGSAGDVAAIAAEAVQHAGIEDPDEPTGADYVPNEPQEIAAT
PASAPEVAPEAGTDRRGRRRVRRVVRPAEGHAPERKAAQQKSRPKNGTTQSDRKQEPKAA
PEAAAESAAASPTGTPSTGQSFAEARAEFDASPRRRRRTRGRSRSDVAPQPVDFADAGST
AEAASSPERVEKSQPEVESSAPTSKAPKKSQDTAVTSDAPAARRGRRRVVRSSR
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaaaccagccaggaactcgcggcagcagccgcgggaatcacaatcgaagacatg
ggggagaaggtccgcgtccacgcgctggccaaggccctcgacgtgcccagtgccgaactg
gtgcaggtgctgaccgcgcaggggatcgagggcaaacgtgccacctcgactctgccgaaa
gccgaggtcggggaattcctcacagctctgacggcggccggggctccggcggagaccgcg
aagaaggctccggccaagcgcacccgcaaggccgcgccgaagaagtccgccgccacaaag
agcactgcgaaaaaggctccggccaccaagaccgcgaccaaggacgttcccgctgaggac
gcgccggtcgatgctactgctgcggagaagaacacggacgcaccggcggagaccgcgaag
aaggccccggccaagcgcacccgcaagaccaccgccaagaaggcggcgccgaagaaggac
gagtcacagcagcccgaggccaccacggccgagcccaagaagtcgcgcgcccggaaggcg
cctgcgaagaagactgcgacgacgcagaccgcggccaagaaggaagagccgactactcct
gagactcctgaggttgccgagccttccgccgaagagaagtcgacgacgaagaccacgtcg
cgtcgtccccgtcgtggacgcaaggcgacagccgccgcgaaggctgtggccacggaagac
aagtcagaccaggctgacaaggcagagaaggctgagccttcggtccagcccacggccgcc
acggccgaatcctccgctgacaccgtggacgagctcatcgaccgcatcgccggctcggtg
gaggctccggaggacgccccgaaggcagagaaaaaggccgcgcggaagactgagactgct
caggccaccccggctcccgagacggagagcccgcgcccggtgcgtcgtcgtgtcgtgcgt
cgggtcggttcccgcagtgccgcgtccgacgctgaactgctccgcagccgtaaagccgag
cagcgccgtgccgccgaggccgtcgagcggacgaccgggaatacggaccagcaggccgag
caggctggagactccgggagctccgagaactcccgggacaaccgtgcgtcctcccaggat
tccggtgaccgcagccagcgtcgcggccgtcgtggtcgtggccgtggccgccgcgaccag
gaccgtcagaaccagagcgacaaccggaacgaggaggtcacccaggcttctgagacctct
gagactgttgaccgtgcacccgaggcacccgaggctcctctggagcccgccgacgatcac
ggcgtccccggtgacctccccgtgctcaccgaaggcgccgacgtcgtcgacgagccggtg
aagctcaggggctcgacccgcctggagtcgaagaagcgctggcgtcaggagcagggtcac
gacaagaagaaggtcgtcagcaaggccgagttcctcgcccgccgcgagaacgtcgaccgc
tcgatggtcgtccgcgactccgagcgctccgaccaccccggcatgaccacccaggtcggc
atcaccgaggacgggatgctcgtcgagcacttcgtcaccagtgagacccagtcgtcgatc
atcggcaatatctacctgggccgcgtccagaatgtgctgtccagcatggaggcggccttc
gtcgacatcggaaccggacgcaacgccgtgctctacgccggtgaggtcgactggcggaac
aagcacctgcacacccgcacccgccgcatcgaggccgcgctgaagcccggcgaccaggtc
ctcgtccaggcgatcaaggatccgctgggacacaagggcgcccgactgaccaaccgcctg
agcttcgccggccgctacctcgtctacgtgcccggcggaaagacccagggcatctcccgc
aagctgcccgagtccgagcgcaagcgcctcaaggacatcctcggccgcgtcgtcccggac
aacggcggcacgatcatccgtaccgcggcagagggcgtgtccgaggaactcatcgccgag
gacgtcaaccgtctccaccagcgctggctcgacatccaggacgccgaggagaaggcccgc
gcgcgcaagggttcccacccggtgaccatgtacgaagagccgaacatgctcgtcaaggtc
atccgcgacatcttcaacgaggacttcaacgagctcgtcgtcgacggggagaagtcctgg
gccgtcgtgcgcgactacgtccaccggatcgccccggacctggagtcccgcgtggtgcgt
taccacccggagcagcacggcgggcgcgatgtcttcgaggaccgccagctcgacgagcag
ctcgccaaggcgctgagccgaaaggtctggctgccgtccggcggctacctcatcatcgac
cgcaccgaggcgatgaccgtcatcgacgtgaataccggcagcttcgtcggctccggcggg
aacctcgaggaaaccgtcaccctcaacaacctcgaggccgccgaggagattgtccggcag
atgcgtctgcgggacatgggcggcatgatcgtcgtcgacttcatcgacatggtcctgccg
gagaaccgcgacctcatgctgcgtcgtctcagtgagttcctcggccgcgaccggacccgt
cacaaggtctccgaggtcaccagcctcggcctggtgcagatgacgcgtaagcgcctcggc
accggcctgctcgagacgttctcgaccgaatgcccgacctgtgagggtcgcggcgtgatt
atccacgatgacccggtcgagcacgtcgaggaggaggacggccaccaccacgagcggcgc
gaccacggtcgccgctccgagaagcgtcaggcccgcgaccagcaggagacgcggcgtcgc
cacgagaagaaccgcgaggacgcaacttccgaccacccggagaagatcggacagaaggaa
gctccggccaaggagtctcaggacgccaaggaggtcaaggaggacaagtccgaggtcgag
cagcagcgtcgatcccggcggacccgtcgtggatcccgcgccggtggtcaggtggctgag
aaggcgccggagaaggcacaggagcagtcacggccgaagactgaatccacggttgagccg
aaggccgagttcaaggccgaatccgaggcagccccggagcactccggggagtcccagggt
gcccgccgtggacgtcgccgcgtggtgcgtagcaacgagaccggtcatcaggacgagccg
cgacgagaccacagcagcgcccgtgacgcccgtgatgaccgtcgctcccatggtgcaggc
agtgccggtgacgtcgccgcgatcgccgcagaggccgtgcagcatgccgggatcgaggac
cctgacgagcccaccggtgccgactacgtgccgaatgagccgcaggagatcgcagccact
ccggcatccgccccggaggttgctccggaggcgggcacggaccgtcgtggtcgtcgccgg
gtgcgccgcgtggtgcgtcctgccgaggggcatgctccggagcggaaggcagcgcagcag
aagtcccggccgaagaacgggacgacccagtcggaccggaagcaggagccgaaggctgct
cctgaggccgccgccgagtcggccgcagcgtctcccaccgggactccgtccaccggacag
agcttcgctgaggcgagggccgagttcgacgcctcgccgcgtcgtcgtcgacggacccgg
ggacgctcccggtcggatgtcgccccgcagcccgtcgatttcgccgatgcggggtcgacc
gcggaggcggcgtcctccccggagcgggtggagaagtctcagcctgaggttgagtcctcc
gcgccgacgtcgaaggcaccgaagaagtcgcaggataccgcggtgaccagcgacgctccg
gcggctcgacgaggtcgtcgtcgggtcgtgcgcagcagccgttag
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