Corynebacterium variabile: CVAR_1188
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Entry
CVAR_1188 CDS
T01594
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cva
Corynebacterium variabile
Pathway
cva03030
DNA replication
cva03430
Mismatch repair
cva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVAR_1188 (dnaE)
03430 Mismatch repair
CVAR_1188 (dnaE)
03440 Homologous recombination
CVAR_1188 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cva03032
]
CVAR_1188 (dnaE)
03400 DNA repair and recombination proteins [BR:
cva03400
]
CVAR_1188 (dnaE)
Enzymes [BR:
cva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CVAR_1188 (dnaE)
DNA replication proteins [BR:
cva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CVAR_1188 (dnaE)
DNA repair and recombination proteins [BR:
cva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CVAR_1188 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEK36544
UniProt:
G0HAD7
LinkDB
All DBs
Position
1367649..1371311
Genome browser
AA seq
1220 aa
AA seq
DB search
MGDPVRRGCRGEHRADLHRSVRTLESGGRLSAMKKSSFVHLHNHTEYSMLDGMAKVDLLA
QEVSRQGMPAVGMTDHGNMFGSDAFYHAMTAADIKPIIGIETYMAPDSRLIKDRIKWGQP
EQKRDDVAGGGYYLHQTMMAENATGLHNLFRLSSLASYEGQVSKYPRMDAEIVAEHAEGI
IATTGCPSGDVQTRLRLGQFDKALEAAAMWQDIYGKDNYFLELMDHGLDIEKRVRDDLLE
IGKRLELPPLVTNDCHYVLQKQAKPHEVMLCVQTGATLEEPTLDEGGKRFAFSGDGYYIK
PAEMLREYWDPIVPDGCDNTLWIAERVQDYGELWEEHTHDRMPKYDVPEGHTPTSWLTSE
VHDGLIERFNGGEVPQEYLDRAKYEIDVIDMKGYPSYFLVVADLIKHARSIGISVGPGRG
SAAGALVAYALTITNIDPIEHGLMFERFLNPERPSAPDIDIDFADDRRSEMIRYAAENWG
EDKVAQVITFGTVKTKQAIKDASRAHHGQPGFQIADRITKALPPAQAAKDIPLSGIMDPE
HPRYGEAAEIRTLIETDPVVKEIYDDALGLEGVVRQAGVHACAVIMASVPLMDHIPMWKR
PADGAYITGWPYPACEAIGLLKMDFLGLRNLTVIADCIKNIKRNRGEDFDLENLETDDPA
SYELLARGDTLGIFQLDSGGMQELLKRMKPTGFNDIVASLALYRPGPMGVGAHWDYADRK
NGRKPIEPIHPELAESIKDILEETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKK
PEVLAKEFGKFSAGMKSNGYSDEAIKALWDTVLPFAGYAFNKSHAAGYGLVSFWTAYLKE
HYTAEYMAALLTSVADKKDKSAIYLADCRHLGVKVLSPDVNESAYTFQSVGEDIRFGLGA
VRNVGEDVVDSIVKAREEKGKFTDFSDYLDKIDATACNKRVTDSLIKAGAFDSLGHPRKG
LNLIHEDAVDAVTSTKKAAAKGQFDLFAGLSEEETGDAFKVEVPDQEWDRKHALTLEKEM
LGLYVSGHPLDGFEASLDAQIDTPLTTVLSGELPDRKTVKVGGIISSVDRRVDKKGNPWA
IVTIEDQHSAQAELLVFARAYALVAPMIAEDNIILAQAEVSIRDDRMSLFCNDLRQAELT
VGAGSGVPLRLRMRIDQCTPENISRLKDVLHNNRGDSDVYLTLADGEEELQYMLPAELRV
DRTSSLMGDLKASTWAGVLG
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
gtgggggatcctgttcggcgtggttgtcgtggtgaacaccgtgctgatctacatcggtcc
gttcgcacgctagagtccggcggtagactgtccgccatgaagaagtcctccttcgtccac
ctgcacaaccacaccgagtactccatgctcgacggcatggcgaaggtggaccttctcgcc
caggaggtctcccggcagggcatgcccgcggtcggcatgacagaccacggcaacatgttc
ggctcggacgccttctaccacgcgatgaccgctgcggacatcaagccgatcatcggcatc
gagacctacatggccccggactcccgcctgatcaaggaccggatcaaatggggccagccc
gaacagaaacgcgacgacgtcgccggtggcggctactacctccaccagacgatgatggcg
gagaacgcgaccggtctgcacaacctcttccggctgtcctccctggcgtcctacgagggg
caggtctcgaagtacccgcgcatggacgccgagatcgtcgccgagcacgccgagggcatc
atcgccaccaccggctgcccctccggcgacgtgcagacccggctgcgcctcggccagttc
gacaaggccctcgaggccgcagcgatgtggcaggacatctacggcaaggacaactacttc
ctcgagctcatggaccacgggctcgacatcgagaagcgggtccgcgacgacctcctggag
atcggcaagcgcctcgagttgccgccgctggtcaccaacgactgccactacgtgctccag
aagcaggccaagccgcacgaggtcatgctctgcgtccagaccggtgcaaccctggaggag
ccgaccctcgacgagggcggcaagcgcttcgccttctccggcgacggctactacatcaag
ccggccgagatgctgcgcgagtactgggacccgatcgtccccgacggctgcgacaacacc
ctgtggatcgccgagcgcgtccaggactacggcgagctgtgggaggagcacacccacgac
cgcatgccgaagtacgacgtccccgaggggcacaccccgacctcctggctcaccagtgag
gtccacgacggactcatcgagcgcttcaacggcggcgaggtcccccaggagtacctcgac
cgcgcgaagtacgagatcgacgtcatcgacatgaagggctacccgtcctacttcctcgtc
gtcgccgacctcatcaagcacgcccgctccatcggtatctccgtcggcccgggccgtggt
tccgccgccggcgcgctcgtggcctacgccctgacgatcaccaacatcgaccccatcgag
cacgggctgatgttcgagcgcttcctcaacccggagcgtccttccgcaccggatatcgac
atcgacttcgccgatgaccggcgttccgagatgatccgctacgccgccgagaactggggt
gaggacaaggtcgcgcaggtcatcaccttcggtacggtgaaaaccaagcaggccatcaag
gacgcctcccgcgcccaccacggccagcccggcttccagatcgccgaccgcatcaccaag
gccctgcccccggcgcaggcggccaaggacatcccgctgtccggcatcatggatccggag
cacccccgctacggcgaggccgccgagatccgcaccctcatcgagaccgacccggtggtc
aaggagatctacgatgacgccctcggcctggagggcgtggtgcgccaggccggcgtccac
gcctgcgcggtgatcatggcgtccgtcccgctgatggaccacatcccgatgtggaagcgt
cccgccgacggcgcgtacatcaccggctggccctatccggcgtgtgaggccatcggcctg
ctgaagatggacttcctgggtctgcgcaacctcaccgtcatcgccgactgcatcaagaac
atcaagcgcaaccgaggcgaggacttcgatctggagaacctcgagaccgacgacccggcg
tcctatgaactgctggcccgcggcgacacgctcggtattttccagctggactccggcggc
atgcaggaactgctcaagcggatgaagcccaccggcttcaacgacatcgtcgcgtccctg
gcgctgtaccgtccggggccgatgggtgtgggcgcgcactgggactacgccgaccgcaag
aacggccgcaagccgatcgagccgatccacccggagctcgccgagtccatcaaggacatc
ctggaggagacctacggtctcatcgtgtaccaggagcagatcatgaggatctcgcagaag
gtcgcgaactacaccgccggtgaggccgacgggttccgtaaggccatgggtaagaagaag
cccgaggtcctggccaaggagttcggcaagttctccgccggcatgaagtccaacggctac
tccgacgaggcgatcaaggcgttgtgggacacggtcctgccgttcgccggctacgcgttc
aacaagtcacacgccgccggctacggcctggtgagcttctggaccgcctacctcaaggag
cactacaccgccgagtacatggccgccctgctgacctcggtggccgacaagaaggacaag
tccgcgatctacctcgccgactgccggcacctcggcgtgaaggtgctgagcccggacgtc
aacgagtccgcctacaccttccaatccgtcggcgaggacatccgcttcgggctcggcgcg
gtccgcaacgtcggcgaggatgtcgtcgactcgatcgtcaaggcgcgtgaggagaagggg
aagttcaccgacttctccgactacctcgacaagatcgacgccaccgcctgcaacaagcgc
gtcaccgattcgctgatcaaggccggcgccttcgattccctcggtcatccgcgcaagggt
ctcaacctcatacacgaggacgccgtcgacgccgtcacctccaccaagaaggccgctgcg
aagggtcagttcgacctcttcgccggtctgagtgaggaggagaccggggacgccttcaag
gtcgaggtccctgatcaggagtgggaccgcaagcacgcgctcaccctggagaaggagatg
ctggggctctacgtctccggccaccccctcgacggtttcgaggcctccctcgacgcgcag
atcgacaccccgttgaccaccgtcctctcgggcgaactgccggaccggaagacggtgaag
gtcggcggcatcatctccagcgtggaccggcgcgtcgacaagaagggcaatccctgggcc
atcgtcaccatcgaggaccagcactccgcccaggccgaactgctggtcttcgcccgagcg
tatgcgctggtcgccccgatgatcgccgaggacaacatcatcctggcgcaggccgaggtc
agcatccgggatgaccggatgagcctgttctgcaatgacctgcgtcaggctgagctcacc
gtcggtgcaggctccggtgtgccgctgcggctgcggatgcgcatcgaccagtgcaccccg
gagaacatctcgcggctcaaggacgtgctccacaacaaccgcggtgactctgatgtctat
ctcaccctcgccgacggtgaggaggagctgcagtacatgctgccggcggaactccgggtg
gaccgcacctcctcgctgatgggtgatctcaaggcctccacctgggccggggtgctcggt
tag
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