Corynebacterium variabile: CVAR_1570
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Entry
CVAR_1570 CDS
T01594
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
cva
Corynebacterium variabile
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cva03016
]
CVAR_1570
Enzymes [BR:
cva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CVAR_1570
Transfer RNA biogenesis [BR:
cva03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CVAR_1570
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEK36924
UniProt:
G0HED8
LinkDB
All DBs
Position
1797055..1798434
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AA seq
459 aa
AA seq
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MENTADNLTDTRYLASPREGLPPLADTSDAVVDVAEVLATGSGPVAVDTERASGFRFDDR
AWLVQLRRAGAGTHLVDPAVVPDAGELLAPVLNDLPWVLHAAHTDLPALTTLGWHTPLLH
DTQIAGRLLGFGQIGLAGMLEELLGVTVAKDKGREDWSARPLPADMLTYAALDVELLVEL
LATAMSRLRRRSEAEGLDRVGWYRQECDHVSADWSRPVQVPDWTRLRGIGAVRDPRGLEM
ARRLTDIRTEVARRRDTPPEKVLRSSVIVDMARAPYQAEDMLRSGRGDSGRGVRHGGRGR
SGGRQGPQMSRELQARLVAGVRDALSVDAAVLPDRPRSPRGRPDHRTWAKDYPVAGRLAS
GFRTAVDDLAERLDLHPSELVVSASVRSVAWDAAQLLETLDAGQASGYVEDPVGWAEDAL
GSLLTAQDARAWQSDLLIPALLPVIAEEMPCPVEDATDD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacaccgcagacaacctgactgacacccgctacctcgcctccccccgggaagga
ctgcccccgctcgccgacacctctgatgccgtcgtcgacgtggccgaggtgctggccacc
ggatcgggcccggtcgcggtggacaccgagcgcgcctccggcttccggttcgacgaccgc
gcctggctggtgcagctgcggcgtgcgggggcggggacacacctggtggacccggcggtg
gtgccggacgccggggagctgctggcgccggtgttgaacgacctgccgtgggtactgcat
gccgcgcacacggacctgccggcgttgacgacgctggggtggcacacccccctgctgcat
gacacgcagatcgccggccggctgctcggcttcgggcagatcggcctggccgggatgctg
gaggaactgctgggggtgacggtggccaaggacaagggccgtgaggactggtccgcccga
ccgttgccggcagacatgctgacctacgccgcgctggacgtggaactgctcgtcgaactg
ctggccacggccatgtcccggctgcggcgtcgtagtgaggccgaggggcttgaccgtgtc
ggctggtaccggcaggaatgtgaccacgtcagtgcggactggtcccggccggtgcaggtc
ccggactggacgcgactgcggggcatcggcgccgtgcgtgacccccgcggactggagatg
gcccgtcggctcaccgatatccgtaccgaggtggcgcgacgccgcgacactcccccggag
aaggtgctgaggtcctcggtgatcgtggacatggcccgcgcaccgtaccaggccgaggac
atgctccgttcgggacgcggggactccggccgcggcgtccgccacggcggacggggacgg
tccggtggacgccagggcccgcagatgtcccgagaactgcaggcccgcctggtggccggg
gtgcgcgatgcactgtcggtggatgctgcggtgctgccggaccggcctcggagccccaga
ggacgcccggaccaccgcacctgggcgaaggactacccggtggcgggtcggctggcctcc
ggtttccggaccgcggtcgacgacctcgccgaacggctggacctgcacccgtcggaactc
gtcgtctcagcctcggtgcgttcggtggcctgggacgccgcccagctgctcgagacgctg
gacgccgggcaggcgtccggctacgtcgaggaccccgtcggatgggccgaggacgccctg
ggcagtcttcttaccgcgcaggacgcccgagcatggcagtcagacctgctgatcccggcg
ctacttccggtgatcgccgaagagatgccctgcccagtcgaggacgcgacggacgactga
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