Corynebacterium variabile: CVAR_1596
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Entry
CVAR_1596 CDS
T01594
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cva
Corynebacterium variabile
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cva03019
]
CVAR_1596 (hrpA)
Enzymes [BR:
cva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CVAR_1596 (hrpA)
Messenger RNA biogenesis [BR:
cva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CVAR_1596 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_30
AAA_16
T2SSE
NACHT
ABC_tran
PhoH
ResIII
AAA_23
AAA_11
HA2_N
Motif
Other DBs
NCBI-ProteinID:
AEK36950
UniProt:
G0HEG4
LinkDB
All DBs
Position
1824386..1828462
Genome browser
AA seq
1358 aa
AA seq
DB search
MDSEDRKPTHQARQGSGRRRKRRPAGQGRSRTKGPLRQNLDRNLHFPEGLPVSARRDEIM
EAIRDNQVVIVAGETGSGKTTQLPKMCLALGRGARGRIGHTQPRRIAARSVADRIADELG
EKVGEPTGRVGYKIRFDDTVSDSTAVKLMTDGILLAEIQHDRLLRAYDTIIIDEAHERSL
NIDFLLGYLRETLPKRPDLKIIVTSATIDPESFAKHFADADGNPAPVIEVSGRTYPVEIR
YRPLVQVVGADDNGEGGREVETDPLEGLVDAVRELSAQGPGDILCFFSGEREIRDAADAL
SDAELRGGVDILPLFGRLSSAEQHRVFSTGPKRRIILATNIAETSLTVPGIKYVVDTGYA
RISRYSHRTKVQRLPVEEISQASARQRSGRCGRTSDGIAIRLYSEQNFEARPEFTDPEIL
RTHLSSVILSMASLGLGDISEFPFLQPPDKKSVRDGIQLLQELGAFAPGNDGTSATSTAR
PLTETGRDMARIPTDPRLARMLVAAHERSVLEQIAVIVAALSIQDVRERPTEKQAQADQA
HARYKADSDFISLLKLWNHLQENRQALSGNQFRQLCKREFIHYVRVREWIDLVRQFLTVI
QDLHWKVPNIRHVRNLTFELDKGGATALAENDVHKALLSGLLTNTGLREGNSRQFLGTRG
THFVIHPSSHLSKKPPQWVMAAELVETSQVFARTVAPLTPEWVEEVAPHMVKYTYAEPHW
SSKRGAAMIHEKALLLGLPIVADRTVALSKVDPTAARETFIRSALVEGDWHTRHRFFAHN
RELLENATQLEEKARRRDIVVDDDTLYDFYDARIPSQVVSARHFDSWWKKARHDSPDLLD
FTEDALISSDSQAAQAREFPDTWRQGSVEYDLEYVFRPGDPADGITMRVPLPLLAGLDDT
DTRWLVAGMREELCVALIRTLPKHLRTSVVPAGEFARAALAKMTPYDGAVDDALADALRS
LGGTGISGSDFDWSRIPDHLRMAFAAVDRRGKVVARSRDLAGLQQELAGEITRSIATVAA
RQSSGKGGSPAPSDAANHRGQHGQHGQRRRQGQKGKKGQPAKGNGSSGGDTGILARDTEW
SVEGIGVIPETVESVVDGQPVTVYPALVIDDSGVVLRAFPSLAAAAGAQFTAVLNLMLDV
CRVQPKQMIKGLPLRQRVAVENYPYGGPEALVEDCRVLACRDLLTEFGPVIRDPDRCAEA
VAAARDRGPGMVRQTVVTVAPAALAVADMSAELENWDGESITEMREQLKFYLGPHQITRH
GATHLRHVPRYVAAMQARLTMMEQDPDREEDLADQIRECLDAVQATRDRLPKSRAASPQI
KDVEWLIEELRVALFAQNLGTTRTASVQRVHKALRKIS
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
gtggattccgaggacagaaagccgacacaccaggcacgacaaggctccgggcggcgccgg
aagcggcgtcctgccgggcaggggcgttcacggacgaagggaccgctgcgtcagaacctc
gaccgtaacctccacttccccgaggggctgcccgtctccgcccgccgtgacgagatcatg
gaggcgatccgggacaaccaggtcgtcatcgtcgccggcgagaccggctcgggcaagacc
acccagctgcccaagatgtgcctggcgctgggccgcggcgcacgtggccgtatcgggcac
acccagccccgccgcatcgccgcccgctccgtggccgaccgcatcgccgatgagctcggt
gagaaggtcggcgagcccacaggacgagtcggctacaagatccgtttcgatgacaccgtc
tccgactccaccgccgtcaaactgatgaccgacggcatcctgctcgcggagatccagcat
gaccggctgctgcgcgcctacgacacgatcatcatcgacgaggcccacgagcgcagtctg
aacatcgacttcctgctcggctacctccgcgagacccttccgaagcgtcccgacctcaag
atcatcgtcacctcggcgaccatcgatccggagtccttcgcgaagcacttcgccgacgcg
gacggcaaccccgcccccgtcatcgaggtctccggccgcacctatcccgtcgagatccgc
taccgtccgctggtgcaggtcgtgggcgccgacgacaacggcgagggcggcagggaagtt
gagaccgatccgctcgagggcctggtggacgccgtccgcgagctgtcggcccagggcccc
ggcgacatcctctgcttcttctccggtgagcgggagatccgggacgccgcggacgccctc
tccgacgcggagctacgcggtggtgtcgacatcctccccctgttcgggcgcctgtcctcg
gccgaacagcaccgggtgttctccaccggtccgaagcgtcgcatcatcctggcgacgaac
atcgccgagacctccctgaccgtgcccggcatcaagtacgtcgtggacaccggctacgcc
cgcatctcccggtactcccaccggaccaaggtccagcggctgccggtcgaggagatcagt
caggcctccgcccgccaacggtcgggccgctgcggccgtacctccgacggtatcgcgatc
cgcctgtactccgagcagaacttcgaggcccggcccgagttcaccgaccccgagatcctg
cgtacccacctgtccagcgtcatcctctccatggcgtccctggggctcggcgacatctcc
gagttccccttcctccagccgccggacaagaagtccgtccgtgacggcatccagctgctc
caggaactgggagccttcgccccgggcaatgacggcacctcggcgacctcgaccgcccgt
ccgctgacggagaccgggcgcgacatggcgaggatccccaccgatccgcgcctggcccgg
atgctggtcgccgcgcacgagcgcagcgtcctcgaacagatcgcggtgatcgtcgccgcg
ctgagcatccaggacgtccgtgaacgtcccacggagaagcaggcgcaggccgaccaggcc
cacgcccgctacaaggcggactccgacttcatctccctgctcaagctgtggaaccacctg
caggagaaccgtcaggcactgtccggcaaccagttccggcagctgtgcaagcgtgagttc
atccactacgtgcgggtccgcgagtggatcgacctggtgcgtcagttcctcaccgtgatc
caggacctgcactggaaggtcccgaacatccggcacgtccggaacctcaccttcgaactc
gacaagggcggtgccacggcccttgccgagaatgacgtgcacaaggcgctgctgtccggg
ctcctgacgaacacgggcctgcgcgagggcaactcccgccagttcctcggtacccgcggc
acccatttcgtcatccacccctcctcgcatctgtcgaagaagccgccgcagtgggtgatg
gccgccgaactggtggagacctcacaggtcttcgcgcggaccgtcgccccgctgaccccg
gagtgggtcgaggaggtggccccgcacatggtgaagtacacctatgcggaaccgcactgg
tcgtcgaagcgcggcgccgccatgatccacgaaaaggccctgctgctgggactgccgatc
gtcgctgaccgtacggtggccctgtcgaaggtcgatccgaccgcggcgcgtgagaccttc
atccgctccgcgctggtcgagggagactggcacacccgccacaggttcttcgcccacaac
cgagagcttctggagaacgccacccagctggaggagaaggctcggcggcgcgacatcgtc
gtggacgacgacaccctctatgacttctacgatgcgaggatcccctcgcaggttgtctcg
gcccggcacttcgactcctggtggaagaaggcccgccacgattccccggacctgctggac
ttcaccgaggacgcactgatcagctctgacagtcaggccgcccaggccagggagttcccc
gacacctggcgccaggggtcggtggagtacgacctggagtacgtcttccggcccggtgac
cccgccgacggcatcaccatgagagtgccgctgccgttgctcgccgggttggacgacacc
gacacccgctggctcgtcgccggtatgcgcgaagaactgtgcgtcgccctgatccggacg
ctgccgaagcatctgcgcacgtccgtcgtccctgccggcgagttcgcccgggccgcactg
gcgaagatgacgccctacgacggtgccgtcgatgacgcactggcggacgccctgcgcagt
ctcggcggcaccggaatcagcggttccgacttcgactggtcgaggatccccgaccatctg
cggatggccttcgctgctgtggaccggcggggcaaggtcgtcgcccggtcccgcgacctc
gcgggtctgcagcaggagctcgccggcgagatcacccggtccatcgccacggtcgccgcc
cgtcagtcctccggtaagggcggctcccctgccccgtcggacgccgcgaatcaccgcggc
cagcacggtcagcacggtcagcgcaggcgacaagggcagaaggggaagaagggacagccg
gcgaagggcaacggttcctccggtggcgacaccggcatcctcgcccgcgacaccgagtgg
agtgtcgagggaatcggcgtgatcccggaaaccgtcgaatcggtggtcgacggccagccg
gtcaccgtttaccccgccctggtcatcgacgattcgggggtggtactacgcgcctttccg
tccctggcggccgcggccggagcacagttcaccgcggtcctcaacctcatgctcgatgtc
tgtcgcgtgcagccgaagcagatgatcaagggccttccgctacgtcagcgtgtggcggtg
gagaactacccctacggtggtccggaagcactggtcgaagactgcagggtactggcctgc
cgcgatctgctgactgagttcggcccggtgatcagggatcccgaccggtgtgccgaggct
gtcgccgcggcacgtgaccgtgggccgggcatggtccgccagacggtcgtgactgtcgca
cccgccgctctggcggtggctgacatgtctgctgagctggagaactgggacggtgagtcg
atcaccgagatgcgtgagcagctcaagttctacctgggtccccaccagatcacccgtcac
ggtgcgacgcatctgcgccatgttccccggtatgtcgcggcaatgcaggcccggttgacg
atgatggagcaggatccggaccgtgaggaggatctggccgaccagatccgggagtgtctc
gatgcggtgcaggcgacccgggaccggctaccgaagagccgtgccgcgtcaccgcagatc
aaggatgtggagtggctcatcgaggaactgcgcgtcgccctgttcgcgcagaacctgggt
accacccggacggccagtgtgcagcgggtgcacaaggccctccggaagatcagctga
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