Corynebacterium variabile: CVAR_1849
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Entry
CVAR_1849 CDS
T01594
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cva
Corynebacterium variabile
Pathway
cva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVAR_1849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cva03019
]
CVAR_1849
03009 Ribosome biogenesis [BR:
cva03009
]
CVAR_1849
Enzymes [BR:
cva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CVAR_1849
Messenger RNA biogenesis [BR:
cva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVAR_1849
Ribosome biogenesis [BR:
cva03009
]
Prokaryotic type
rRNA helicases
CVAR_1849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
AAA_22
adh_short
HEM4
RecX_HTH1
Motif
Other DBs
NCBI-ProteinID:
AEK37200
UniProt:
G0HEY8
LinkDB
All DBs
Position
complement(2126655..2128853)
Genome browser
AA seq
732 aa
AA seq
DB search
MTETENVSGDENQPDTSQSTVTQNDLLETSGESPLSVGDIVGADDSENTADRDVTEENPA
DNNDTETESGFAGLGLPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKT
AAFALPALSRLDTTERHPQVLVLAPTRELALQSADAFESFASHIGGVSILPIYGGAPYGA
QLSGLRRGAQVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADT
PDSRQVALFSATMPSAIRRLSKQYLNDPQEYTVKSEQRTGDNITQDYLMVSHRNKLDALT
RILEVTEFDAMIIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLD
ILVATDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTPRERRLL
KNIERATKSHPNEIQLPGVDEVNEARKNKFFTSITEARKGKQVDIFRELVTEYAEANDVT
PTDIAAALAAKLQGREAFYVQEIQEPQRRERRTRDDWDRGEQDSGVHRPFSERFNRDAPK
VTDRNGKELAVYRVSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVELPADL
PKDVFEQLDQTRISGKLINIEPDPGAPAGRPARNRRDRDDRDGDRRGGGRGGYGGHGGRG
GRDRDDRGGRGDRGGYSDRGRFDRDKGNRDHGNRDHGGRSSWRGNRNDRYDRNDRNDRGG
DRGGYRGRRDRD
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaactgagaacgtttccggcgacgagaaccagccggacacctcccagtcgacg
gttactcagaacgatctgctcgagacctccggggaatcccccctgagcgtcggtgacatt
gtgggcgcagatgattccgagaacaccgcggacagggatgtcaccgaagaaaatcctgca
gacaacaacgatactgagactgaatccggtttcgcgggcctcggcctgcctgaccgcatc
ctcgccgcggtggagaaggtcggttatgtcacgccgtccccgatccaggcggccaccatc
ccggctctgatggacgggcacgacgtcgtcggcctcgcccagacaggtaccggcaagacc
gcggccttcgcgctgccggccctgtcccgcctggacaccaccgagcgccacccgcaggtg
ctcgtcctggccccgacccgtgagctcgcgctccagtcggctgacgccttcgagtccttc
gccagccacatcggtggcgtgagcatcctcccgatctacggcggtgccccctacggcgca
cagctgtccggcctgcgccgtggcgcgcaggtcatcgtgggtaccccgggccgtatcatc
gaccacctggagaagggcagcctggatctgtcccacctgcgtttccttgtcctcgacgag
gccgacgagatgctcaacatgggcttccaggaggatgtcgagcgcatcctcgccgacacc
ccggactcccgtcaggtcgcgctcttctccgcgaccatgccctcggcgatccgtcgtctg
tcgaagcagtacctcaacgacccccaggaatacaccgtcaagtccgagcagcggaccggt
gacaacatcacgcaggactacctgatggtgtcgcaccgcaacaagctcgacgcgctgacc
cgcatcctcgaggtcaccgagttcgacgcgatgatcatcttcgtgcggaccaagagcgac
accgaggagctcgccgacaagctgcgggcccgtggcttcgaggctgcggccatcaacggt
gacatcgcgcagaaccagcgtgagcgcaccgtcgaccagctcaaggacggccgactggac
atcctggtggcgaccgacgtcgccgcccgtggcctcgacgtcgaccgcatcacccacgtc
ttcaactacgacatcccgcgggacaccgagtcctacgtgcaccgtatcggccgtaccggc
cgcgccggccgcaccggtcgggcgatcctcttcgtcaccccgcgtgagcgtcgtctgctg
aagaacatcgagcgtgcgaccaagtcccaccccaacgagatccagctgccgggtgtcgac
gaggtcaacgaggcccgcaagaacaagttcttcacctcgatcaccgaagcccgcaagggc
aagcaggtcgacatcttccgtgaactcgtcaccgagtacgccgaggccaatgacgtcacc
ccgacggacatcgccgccgctctggccgcgaagctccagggtcgcgaggccttctacgtc
caggagatccaggagccgcagcgtcgtgagcgtcgcacccgcgacgactgggaccgtggc
gagcaggattcgggcgtgcaccgtcccttctccgagcgtttcaacagggacgccccgaag
gtcaccgaccgcaacggcaaggaacttgccgtctaccgcgtcagcgtcggacaccgtcag
cgcgtccgcccgggtgccatcgtcggtgccctggccaacgagggcggtctgaactcccgt
gacttcggccggatcagcatcttctccgagcactccctcgtggagctgccggcggatctg
ccgaaggacgttttcgagcagctcgaccagacccggatctcgggcaagctgatcaacatc
gagcccgacccgggcgctccggccggccgtcccgcccgcaaccgtcgcgaccgcgatgac
cgcgacggtgaccgtcgtggcggtggccgtggtggatacggcggacacggtggacgcggt
ggccgtgaccgtgacgaccgcggtggacgcggcgaccgtggcggctactccgaccggggc
cgtttcgaccgtgacaagggcaaccgcgaccacggtaaccgtgaccacggtggacgcagc
agctggcgtggcaaccgcaacgaccgctacgaccgtaacgaccgtaacgaccgcggtggg
gaccgtggcggttaccggggtcggcgcgaccgcgactag
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