Corynebacterium variabile: CVAR_2110
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Entry
CVAR_2110 CDS
T01594
Symbol
pcrA1
Name
(GenBank) ATP-dependent DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cva
Corynebacterium variabile
Pathway
cva03420
Nucleotide excision repair
cva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVAR_2110 (pcrA1)
03430 Mismatch repair
CVAR_2110 (pcrA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cva03400
]
CVAR_2110 (pcrA1)
Enzymes [BR:
cva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVAR_2110 (pcrA1)
DNA repair and recombination proteins [BR:
cva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CVAR_2110 (pcrA1)
MMR (mismatch excision repair)
Other MMR factors
CVAR_2110 (pcrA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEK37460
UniProt:
G0HHI0
LinkDB
All DBs
Position
complement(2396148..2398943)
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AA seq
931 aa
AA seq
DB search
MNQGMSDNPFDGQIPFPEDAFPDESGQDAGWDAPPEEDLPPDDAGDLLNGFAADFAVSVA
HLAPLPELPPEPHSPDMTSGSAGATSAPQRATAPASLRTGGGNGLAAREEELLAGLNPAQ
RAAVVHHGSPLLIVAGAGSGKTSVLTRRVAWLLAHGVAPWQILAITFTNKAAAEMRERVT
DLVGPVAERMWLSTFHSLCVRILRANAQLIEGLNTNFTIYDSDDQKRLITMVLKDHDCDL
KEFAPRAVLSVISNWKNELQGPAEALKETQEDGNRHREQIALVYRDYQARLRESNAVDFD
DLIGEVVWMLQANPAVADHYRRRFRHVLVDEYQDTNHAQYVLVSTLVGEGPDAGELCVVG
DADQSIYAFRGATIRNIEEFERDYPHAETILLEQNYRSTQNILSAANAVIARNQGRREKK
LWTDSGDGPLIGGYVADNEHDEARFIAQTIDQLVDDGDATYGDIAVMYRTNNSSRVVEDV
LVRSGLPYKVVGGTRFYERREIRDVVAYLKVLDNAEDTMGLRRIINTPRRGIGDRAISQV
SVHAENMDLSFAGGLRAAAAGEVPGLSSRGRNAIAGFLELMDGLREDLPGHVMEASDGSS
LEIPDLGAVIRDVLDRTGYTTELEKSNDPQDGSRLDNLHELVSVGHEFSQEAANLAAYEA
MPDTAGGTAAQQESGAASDADAAADAVLSEGEPAPGSLQAFLERVSLVADADQIPGEEQE
LITLMTLHTAKGLEFPVVFLTGWEDGQFPHQRALGDPTELSEERRLAYVGITRARQRLYL
SRAVTRSSWGTPANNPPSRFLDEIPGELIDWIREEPTPSWGGGWGSSTSGGYADGTSFGG
GGFGGGYGGGSGYGSRQSSSPAPRRKAPSSPLSGGKPLELAVGDRVNHDKYGLGTVKTVD
GSGVRATATIDFGASGTVRLMLIGGVPMEKL
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccagggcatgtccgacaaccccttcgacgggcagatcccgttccctgaggacgcc
tttccggacgagtccgggcaggacgcaggatgggacgccccgccggaggaggacctgccc
ccggacgacgccggtgacctgctcaacggtttcgcggcggacttcgctgtctcggtcgcc
cacctcgccccactgcccgaactgccgccggagccgcactccccggacatgacctcgggg
agtgccggtgcaacgtccgcgccgcagcgggcgaccgctccggcgtccctgcgcaccggg
ggtggcaacgggctggcagcccgtgaagaggagctgcttgccgggctgaacccggcccag
cgtgccgccgtggtccaccacgggtcgccgctgctcatcgtcgccggcgccggttccggc
aagaccagtgtgctcacccgacgggtggcgtggctgctcgcccacggtgtcgcgccctgg
cagattctggcgatcaccttcaccaacaaggccgccgcggagatgcgcgaacgtgtcacc
gatctggtcggcccggtcgccgagcggatgtggctgtccaccttccactccctgtgtgtc
cgtatccttcgggcgaatgctcagctcatcgaggggctgaacaccaatttcaccatctat
gactcggatgaccagaagcgtctgatcaccatggtgctcaaggaccacgactgcgacctc
aaggagttcgctccgcgcgcggtgctcagcgtcatctccaactggaagaacgaactgcag
gggccggccgaggcgctgaaggagacgcaggaggacggcaaccggcaccgcgagcagatc
gccctggtctaccgcgactaccaggcgcggctgcgtgaatcgaacgccgtggacttcgac
gatctcatcggcgaggtcgtctggatgctgcaggccaacccggcggtggcagaccattac
cgccgccggttccgccatgtgctcgtcgacgagtaccaggacaccaaccacgcccagtac
gtgctggtttccacgctcgtgggggaggggccggatgccggcgaactgtgcgtggtcggt
gacgcggaccagtcgatctacgccttccgtggtgcgacgatccggaatatcgaggagttc
gagcgcgactacccgcatgccgagacgatccttctggaacagaactaccgctccacccag
aacatcctctcggcggcgaacgccgtcatcgcccggaaccaggggcgccgcgagaagaag
ctgtggacggattcgggtgacggcccgctgatcggcggttacgtcgccgacaacgagcat
gacgaggcccggttcatcgcccagaccatcgaccagctcgtcgacgacggggacgccacc
tacggcgatatcgcggtgatgtaccggacgaacaactcctcgcgcgtggtcgaggatgtg
ctcgtgcgttcgggcctgccctacaaggtcgtcggtggtacgcggttctacgaacgacgg
gagatccgggatgtggtggcatacctcaaggtcctcgacaacgccgaggacacgatgggc
ctgcgccgcatcatcaacaccccgcgccgcggtatcggcgaccgggcgatttcgcaggtc
agcgtgcacgccgagaacatggacctcagcttcgccggtggtctgcgtgccgcggcggcc
ggcgaggtgccgggcctgagttcccggggacgcaacgccatcgccgggttcctggagctc
atggacggtctgcgcgaggatctgcccggccatgtcatggaggcgtccgacggatcctcc
ctggagatccccgatctgggcgcggtgatccgggacgtcctggaccgcacgggctacacc
acggaactggagaaatcgaacgatccgcaggacggctcccggctcgacaacctccatgag
ctggtctccgtcggccatgagttctcccaggaggccgcgaatctcgccgcctatgaggcg
atgccggacactgcaggtggtaccgcggcgcagcaggagagtggcgctgcatctgacgca
gatgctgccgcggacgccgtgctctccgagggcgagccggcaccgggcagcctccaggca
ttcctggaacgcgtcagcctggtcgcggacgcggaccagattcccggtgaggagcaggaa
ctcatcacgctgatgaccctgcacaccgccaaggggctggaattcccggtggtcttcctc
accgggtgggaggacggccagttcccgcaccagcgtgcactgggcgatcccaccgaactg
tccgaggaacggcgtctggcctatgtcggcatcacgcgtgcccgtcagcggctgtatctc
tcgcgcgcggtgacgcggtcatcctgggggacgcccgccaacaatccgccctcgcgcttc
cttgacgagatccccggtgaactcatcgactggatccgtgaggagccgactccgtcctgg
ggtggtggctgggggtcgtcgacctccggtggttacgccgacggtacgagcttcggtggt
ggaggcttcggtggcggctacggcggcgggtccggttacggttcccgccagtcgtcctct
cccgcccccaggcgcaaggcaccgtcctcgccactgtccggcgggaagccactggaactg
gccgtgggggaccgggtcaaccacgacaagtacgggctcggcacggtcaagaccgtcgac
gggtccggggtgcgcgccaccgccaccatcgacttcggagccagtggaacggttcggctc
atgctgatcggtggagtcccgatggagaagctctag
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