Congregibacter variabilis: R0135_00315
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Entry
R0135_00315 CDS
T10777
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0135_00315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvb03019
]
R0135_00315
Enzymes [BR:
cvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R0135_00315
Messenger RNA biogenesis [BR:
cvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0135_00315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_22
SwrA
Motif
Other DBs
NCBI-ProteinID:
WOJ93626
LinkDB
All DBs
Position
81327..82634
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AA seq
435 aa
AA seq
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MNFDNLGLLPDLVKAVNDRGYSQPTPIQIKSIPLVLDGQDILAAAQTGTGKTAAFVLPIL
QRLAFVGLARRKQVRTLILTPTRELASQVHESVETYGHYLDLRSAVVFGGVRAEPQIAAL
ERGVDTLVATPGRLLDLAQRGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVEQLPKNRQ
TLMFSATFSKEIRLLAGQYLVDAVSVEVAPANSTTELVDQMAYPVDPSRKTDLLIHLLNE
RQWSQVLVFCRTKHGANQLSKKLLEAGFAAAPIHGNKSQNARQRALDDFKSGSLQLLVAT
DIAARGLDIDQLPEVVNFDLPAVPEDYVHRIGRTGRAGSSGRSHSLLTLEDVPLLKGIER
LICKVIPRVQVSGFEPIDTPPSPGQRNTGASDKRQTAPVSRAPEQMARRSRGSADESHNT
LKHRFNTPKKTGSVG
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgacaatttaggtcttttgccggatctggtgaaagcggttaacgaccgcggc
tatagccagccaacccccattcaaatcaaatcgataccgctggtgctcgacggtcaggat
atcctcgcggctgcacaaacgggcaccggtaagactgcggcctttgttttgcccattctt
cagcgtttggcttttgtcggtctagcgcgacggaagcaggtacggactttgattctcacg
ccgacccgagagcttgcatcccaggtacacgagtccgtggagacctacggccattatctg
gatttgcgcagtgcagtggtgtttggcggtgtacgagccgagccccagattgccgcactg
gaacggggggtggataccctggtagcgacgccaggcagacttctggatcttgcgcaacgc
ggtgcggtggatttcagtgctctggaagtgctggttctcgatgaggccgaccgcatgctg
gacatgggcttcattcatgatatccgaagaatcgtggagcagctgccgaaaaaccggcaa
acgctgatgttctcggcaaccttctccaaggaaatacgcttgctcgccggccagtatctg
gttgatgcggttagcgtggaggtggcgcctgccaatagcacaacggaactggtcgaccaa
atggcgtatccggtagatccgagccgcaagacagacttgctgattcatctgctcaatgag
cgacagtggtctcaggtactggttttttgtcgcactaaacatggggccaatcaactttcc
aagaagttgctcgaggcgggttttgcagcagcgcctatacacggaaacaaaagtcagaac
gcaaggcagcgcgccctggacgacttcaagagcggtagcttgcagttgttggtcgctaca
gatattgccgcccgaggcttggacatcgatcaactgcccgaagttgtgaactttgattta
ccggctgtccccgaagattatgtgcacagaattggccgtacaggacgagcgggatcaagc
ggacgctcgcactctttactgactctcgaggatgtacctctgctcaagggcatcgagcgc
ctgatttgcaaggtaataccccgagtccaggtgtctggttttgagcctatcgatacgccg
ccgtctccagggcaaagaaacacgggcgcgagtgacaagcgccagacggcaccggtgagt
cgagcgcccgagcagatggctcggcgcagtcgtggatctgcagatgaatcgcacaatacc
ctgaaacaccgcttcaacactcctaaaaaaaccggctccgtaggctaa
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