Congregibacter variabilis: R0135_03140
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Entry
R0135_03140 CDS
T10777
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0135_03140 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvb03019
]
R0135_03140 (rne)
03009 Ribosome biogenesis [BR:
cvb03009
]
R0135_03140 (rne)
Enzymes [BR:
cvb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
R0135_03140 (rne)
Messenger RNA biogenesis [BR:
cvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R0135_03140 (rne)
Ribosome biogenesis [BR:
cvb03009
]
Prokaryotic type
rRNA processing factors
R0135_03140 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WOJ94171
UniProt:
A0ABZ0I7W7
LinkDB
All DBs
Position
693494..696457
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AA seq
987 aa
AA seq
DB search
MKKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDF
GAERHGFLSVKEIAREYFYRDPKDIDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTF
ISLPGRYMVLMPNNPRAGGISRRIEGDDRAELREALSALDIPDGMGVIIRTAGVGRSAEE
LQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVLIRAVRDYLRDDVDQVLIDSPDAFKQ
AMDFVSMVMPKYEQRIKLYEDNIPLFNRFQIESQIESAFQREVRLPSGGSIVIDPTEALV
SIDINSARATKGVNIEETALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAARNQRAVE
TRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIVCPRCTGQGTIRDTKSLS
LSILRLLEEEAIKERTAEVRAIVPVDVAAYLLNEKRVALSEIESLTRVRVLVIPNPNLET
PHFEVTRLRDDEVDGDQETSYKVEIAVPDADSISDAHDHSLPSQEAVVQRIAPTAAPAPA
EAAPVTEPEAATVAATATAVAATAAVAAKPGLAQRLWVSFFGDPNASEASAEVASDESAK
TTSPDGASSDSKASDEDRPKRTRGRRRRGGQGRNQNRAVDDGEQITESTAADADAEVEAE
AETAVSDADGEASQRSEDDKPRRRRRRSRGGRRPGAEDQESSAETNDADALDSDDAVVEV
AQDRDDGSEAENKPRKRPSGQRRGEPRRRRRPAAVATDADADAAPETQATTAETDSPSTD
GPSEQVVVAEVSEPHVETPQSPEAEAAPAVVPVSDEVLAAEPVPSELANLTEEPASTPEA
EEPTASSSIEAAMGLAAQSPVQEAPEPETRGNEAHDVDKSAEASDAAAPAITAEAAPEVE
SPDTAPVTSLQVEAEAANASGTGLTEQGRAVNDPRVAPAPIQELKIETGQMVLFSETPAP
AVEAPDRQVPRASNDPRGSKTASSAEG
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatgctaatcaatgctacgcatgcagaagaaatgcgcgtagcacttgtcgat
ggtcagaagctctacgacctggatatcgaaaacagaacacgcctgcaaaagaaagccaac
atctacgttggtaaaatcacccgggtagaacccagcctcgaagccgcctttgtggacttc
ggtgctgagcgtcacggatttttatcggttaaagaaatcgcccgggaatatttctatcgc
gaccccaaagacatcgacgggaaattctccatccgagatgttgtaaaagaaggcacacgc
ctgatcgttcaggtagacaaggaagagcgtgggaacaagggggctgcgctaactacattc
atcagccttcccggtcgctacatggtcctgatgccaaacaatccccgggctggaggaatc
tctcgccgcatagagggtgatgatcgagcagagcttcgcgaagcgctcagcgcactggat
attcccgatggtatgggcgtcatcattcgcaccgccggtgtgggtcgatctgccgaagaa
ctccagtgggacctgaactatctgctgcagctttgggaagccgtgagcaaggcgggcgaa
gagaatcgctcccccgtgctgttgtatcaagagagcaacgtccttatccgtgcggtgcga
gactatctgcgcgacgacgttgatcaggtgcttatcgactctccagacgcctttaagcag
gctatggactttgtcagcatggtcatgcccaagtacgagcaacgcatcaagctctacgaa
gacaacatccccctcttcaaccgatttcaaatcgaaagccagatagagtctgcgttccag
cgcgaagtgcgcttaccctccggtggatcgattgttatcgaccccacggaagcgctggtg
tccattgacatcaactccgcgcgggcaaccaagggcgtcaacatcgaagaaactgccctg
cagactaaccttgaagcggctgacgaagtggcgcgacagcttcgattgcgcgatatgggc
ggactgattgttatcgattttatcgacatgcttgctgctcgtaatcagcgtgccgttgag
acccgcatgcgcgacgccctggccatcgatagagccagagtgcaggtgggccgaatttcg
cgctttggtcttctggaaatgtcacgccagcgtttgcgtccgtctctgggtgagaccagt
gccattgtttgcccacgttgcacaggtcaaggcactattcgtgataccaagtcgctctcg
ctttctattctgcgcctgcttgaggaggaagccatcaaggagcgtaccgctgaagtacgc
gcgattgtgccagtagatgtggcggcttatctgctaaacgaaaaacgtgttgctctgagc
gagatcgaaagcctcactcgcgtgcgggtacttgtcatacccaatccaaatctggagaca
ccgcactttgaagtaacgcgcttgcgggatgatgaagttgatggcgatcaagagactagc
tacaaagtcgagatagctgtccccgatgctgacagcatttcggatgcccatgatcacagc
ctgccaagtcaggaggcggtagtgcaaagaatcgcccctactgccgctcccgcacccgcg
gaagcagcaccagttactgaacctgaggcagcaaccgtcgccgccactgcaactgccgtt
gcagccaccgcagcggttgcagcaaagcctggattggcacaacgtttatgggtcagtttt
tttggcgaccccaacgctagtgaagcgtccgcggaagttgcctccgatgaatccgcaaag
accacaagtcccgatggagccagctctgacagcaaggcctcggatgaggatcgtcccaag
cgaacccgcggtcgccgacgtcgcggcggacaaggccgcaatcagaatcgcgctgtcgac
gatggcgagcaaatcaccgagtcaactgccgcggatgctgatgcagaagtagaagcagaa
gcagaaacagcggttagcgacgccgacggtgaggccagccaacggtccgaagacgacaaa
cctcgtcgccgccgtcgtcggtctcgcggtggacgtcgcccaggtgcagaggaccaggaa
tcatcggcggaaacaaacgacgctgatgccctggactctgatgacgcagtagttgaagtt
gcacaggatagggatgatggtagcgaggcagaaaacaagccccgcaagcgtcccagcggt
cagcgtcgcggtgaaccccgtcgtcgccgtcgtccagcggctgtagctacagatgcagat
gcagatgcagcgccagaaacgcaagcgacgactgcagagacagactcaccatctacggat
ggcccaagcgaacaagtcgtagtggctgaggttagtgagccgcacgtagagacaccccaa
tcaccggaagccgaagcagctcccgcggtcgttccagtatccgatgaagtgttagcagca
gagcccgttccaagcgagctggcaaacctcactgaggaaccagcgagcactccggaagct
gaagagccaacagccagcagcagtatcgaagctgccatgggcctggctgcacaatcgcct
gtacaggaagcgccggagccagaaactcggggtaacgaggctcacgacgtggataagtcc
gcagaggcttcggatgccgctgcgccagcaatcacggcagaggcagctcctgaagttgaa
tcaccagacacagctcccgtgacttcgctacaagttgaagcggaagcagccaacgcatct
ggcactggcttaactgagcagggacgcgcggtgaatgatcctcgtgttgccccggctccg
attcaggaattgaaaattgagaccgggcaaatggtgctgttctctgagacccccgccccc
gctgtcgaggcaccggatcggcaagtccccagagccagcaacgatcctcggggttccaag
actgccagcagcgcagaaggttag
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