Congregibacter variabilis: R0135_03495
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Entry
R0135_03495 CDS
T10777
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R0135_03495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvb03400
]
R0135_03495 (mfd)
Enzymes [BR:
cvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R0135_03495 (mfd)
DNA repair and recombination proteins [BR:
cvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R0135_03495 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
RC-P840_PscD
DUF6120
Motif
Other DBs
NCBI-ProteinID:
WOJ94237
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All DBs
Position
772597..776184
Genome browser
AA seq
1195 aa
AA seq
DB search
MARIILGHPPARNMTNVELLTVWNPGPPRSTIATLSAQNRPIPMLFAPLLDKCPWPTKTG
SRTAIGPFFGSTASLCIAELATEERLLVVFTEDTAQTQMLARELPFFLSPDCEILQLPDW
ETLPYDNFSPHQDIVSERLRTLHRLPHARRGVLLLPVPALMQRLPPRHYIEANSLLLKEG
QSLDIEALRAALSKNGYRAVDTVYEHGEFAVRGSLMDIYPMGSKLPLRIDLLDDEIDSLR
CFDPETQRTVEKLPSVDLLPAREFPLDKPGIKAFQQRWYARFDVDHDQCPIFTELSEGRA
PGGAEYYLPLFFDACESLLDYLPKNAALLTLGDHYSAASRFWDEASRRFTDYGVDPRRPL
LSPGELFTPVEELFQKLGEHAVLELRQTAEAPAHIKTDIEPPPQLLGGENESGLATRLKT
LLQGHSGPVVLCAETEGRREILLESLDTPPQEVASWAEFLASGSQFSLAVAPIDRGINLG
PTGPMLITETQLFGERVAQRRRRRGRDSQDPEAIFRDLNELRQGAPVVHAEHGIGRYVGL
THLEVDGAAAEFLTLEYADQSKLYVPVASLQLISRYAGSDPEHAPLHRLGSEQWDKAQRK
AREKANDVAAQLLEVYARREARQGVQFDNPQEDYERFAAGFPFEETPDQAAAIEAVEQDM
CASGVMDRLVCGDVGFGKTEVAMRAAFIATANQRQVAVLVPTTLLAQQHYNSFRDRFANW
PVKIEVISRFKSTSDTKDVVKRLTNGDVDILIGTHKLIQSDIKFADLGLLIIDEEHRFGV
RQKDSIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVRQQDHG
LIKEAVLRETLRGGQVFYVHNEVRTIEQRAAALRELLPDLSIVIAHGQMHETQLERVMSD
FYHQRHHILICTTIIETGIDIPNANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLC
PPASAMTKDASKRLEAIEAAGDLGAGYQLATHDLEIRGAGELLGDEQSGQIQSVGFAMYS
QLLRQAVEALRRGDIPDIDAPLQAITEVNLHAPALIPDDYLPDPNMRLILYKRIAACEND
LALREMQVEMIDRFGLLPPPVKGLFSASSLRLLAQRCGIKALELGEAGGHIDFMDNTNVD
PLQLVTLVQEQPLNYKLAGPTRLRIERALPDLKVREELAKELLQRLAGDLLDDAA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgcattatcctcggccatccgcctgctcgcaacatgacaaatgttgagttgctc
acagtttggaaccccgggccacctcgctctacaatagcgaccctttccgcgcagaatcgc
cccattcctatgctgttcgctccattgctggacaaatgtccctggcccaccaagaccggc
agccgtaccgctatcggcccttttttcggtagcaccgcatcgctgtgcattgcggagctt
gcgaccgaggagcgattactcgtcgttttcacggaagataccgcccaaacgcaaatgctg
gcccgagaattaccgttctttttgtcgccagactgcgagatattgcagcttcccgattgg
gaaaccctgccctacgataacttttcaccgcaccaggacatcgtgtccgagcgattgagg
accctgcaccgcctgcctcacgcgcgccggggggtgcttttactcccggttccagcactg
atgcagcgcctgccgccgcgccactatatcgaagccaacagcctgcttttaaaagaaggc
caatctttggacatagaagctcttagagctgccttatccaagaatggctaccgcgcggtg
gatacggtttatgagcacggggagtttgctgtgcgtggctcgctcatggacatctacccg
atgggcagtaaattgcccctgcgcattgacttactcgatgacgagattgattcgctgcgg
tgctttgatccggagacccagcgcaccgtcgagaagctgcccagtgtcgacttgctgccg
gcccgggagttccctctggacaagccgggcatcaaggccttccagcagcgttggtacgcc
cgatttgatgttgaccacgaccagtgccccatatttacagagctcagtgaaggtcgcgcc
cctggtggcgcggagtattacctgccactgttttttgatgcctgcgaatccctgctggac
taccttccgaaaaatgcggccctgctcacgctgggcgatcactacagcgccgccagccga
ttctgggatgaggcatcgcgacgctttaccgattacggcgtcgatccacgccggccgcta
ttgtctcccggtgaactgtttacacctgttgaggagctttttcagaagctcggcgagcat
gctgtccttgaattgcgacaaaccgctgaagcgcccgctcacatcaagactgacattgaa
ccaccaccacaacttcttggcggtgaaaacgaaagcggactcgcaacccgtctcaagacc
ctgctccagggccacagcggacctgtagtgttgtgtgcagaaacagaaggacgcagggaa
attctactggaatccctggatacgccacctcaggaagttgcaagttgggctgaatttctt
gcgtccggctcgcagttttctctggcagtggcgcctatcgatcgcggcatcaacctcggg
cccaccgggccaatgctgataaccgaaacccaactgtttggagaacgcgtggcgcagcgt
cgtcgccgtcgtggccgggactcccaggacccggaagcgattttccgagacctgaacgaa
ctcaggcagggtgctcccgttgttcatgctgaacacggtatcggtcgctatgtgggtcta
acgcaccttgaagtggatggtgcggctgctgaatttctaacgctggaatacgcggatcaa
tcaaagctttatgtgcccgtcgcttcactgcagctcatcagccgctatgctggcagtgat
cccgagcacgccccgctccatcgcctcggatccgagcagtgggacaaagcccagcgcaag
gcacgggagaaggccaacgacgtggcggcacagctgcttgaagtctacgcacgccgggag
gcacgccagggtgtccagtttgacaacccgcaagaggactatgaacgcttcgccgcgggc
ttccccttcgaagaaacaccggatcaagctgctgctatcgaagcggtagaacaggatatg
tgtgcctccggagtaatggatcgcctggtctgcggggatgtgggctttggtaaaacagaa
gtcgccatgcgcgcagcgtttattgccactgccaatcagcgtcaggttgcagtattggtc
cccacaacgcttctggcccagcagcactacaattcctttcgcgacaggtttgccaattgg
ccggtgaaaatagaggtcatctcgcgctttaaatccacctcggacaccaaagacgtcgtc
aagcgcctgaccaacggtgatgtcgatattctcattggcacacacaagctcatacagagc
gatatcaagtttgccgatctgggcctcctcattattgacgaggaacatcgctttggcgtg
cgccaaaaagacagcatcaaggcccttcgagcggaggtagatattctgacgctcactgca
acacctatcccgcgcacgctaaacatggctttgggcggcatgcgtgatttatcgatcatt
gcgacgcccccggccagaagactttccatcaaaacctttgtgcggcagcaggatcatggc
ctgataaaagaggctgtacttcgcgaaacgctgcgtggcggacaggtgttctacgttcac
aatgaagtgagaaccatcgaacaacgggccgcggccctgcgggaactccttccggacctg
agcatagtcattgctcatggccagatgcatgagacccagctcgaaagggtgatgtccgat
ttttatcaccagcggcatcatattttgatttgtacgacaatcatcgaaaccggcatcgac
atacccaacgcgaacaccatcatcattgacagggccgacaaatttggcctggcccaactg
caccagttgcggggacgcgtgggccgatctcaccatcaggcctatgcctatctgctgtgc
ccaccggcgtcggcaatgaccaaggatgccagcaagcggcttgaagccatcgaggccgca
ggcgatctcggcgcgggctatcagctggcaacacatgaccttgagattcgcggcgccggg
gaattattgggcgatgagcaaagcgggcaaattcaaagcgtcggctttgccatgtactcc
cagttactgcgtcaggcggtagaagcattgcgtcgcggcgacattccagacatcgacgca
ccgctgcaggccattaccgaagtcaaccttcatgcccctgcactcattccggatgactat
cttccggatcccaatatgcgtctaattctctacaagcgcatcgcggcttgcgaaaatgat
ctggcgctgcgagagatgcaggtagagatgatcgatcgttttgggctgctgccgccaccg
gtaaaaggcttgttcagtgccagttccctgcgactacttgcccagcgatgtggtatcaag
gctctggagcttggtgaggcaggaggacatatcgactttatggataataccaatgtggat
cccttacaactcgtgacactggtgcaggaacagccgcttaactacaagcttgccggtccc
acccgcctgcgcatcgaacgcgcgcttccagacctcaaagttcgagaagagcttgctaaa
gaactgctccagcgacttgcaggagatctacttgatgatgctgcataa
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