Congregibacter variabilis: R0135_03535
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Entry
R0135_03535 CDS
T10777
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cvb Congregibacter variabilis
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvb03032
]
R0135_03535 (topA)
03400 DNA repair and recombination proteins [BR:
cvb03400
]
R0135_03535 (topA)
Enzymes [BR:
cvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R0135_03535 (topA)
DNA replication proteins [BR:
cvb03032
]
Prokaryotic type
DNA Topoisomerases
R0135_03535 (topA)
DNA repair and recombination proteins [BR:
cvb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R0135_03535 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
CysS_C
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
WOJ94245
LinkDB
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Position
complement(781482..784208)
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AA seq
908 aa
AA seq
DB search
MGKSLVIVESPAKARTINKYLGNDFVVKSSVGHIRDLPTAGSAKTTDAKERAAKAAQTRK
MSPDEKAVQKKQRAREQLVRRMGIDPEEGWAANYEILPGKEKVVSELRKLAETSDTVYLA
TDLDREGEAIAWHLREAIGGDDDRYQRVVFNEITKKAIQEAFSQPSRIDQARVNAQQARR
FLDRVVGYMVSPLLWAKVARGLSAGRVQSVAVRLIVEREKEIRAFIPEEYWEIHAELENS
AAEKARFEVRRLRGEKFRPDNEKDAMAARDALAEADYVVSDREDKPTRSKPPAPFITSTL
QQAASTRLSFSVKKTMMLAQRLYEAGYITYMRTDSTNLSADAVAACRDYIKGNFPKQYLP
DEAARYSSSDNAQEAHEAIRPSDVNVLQGHLQNMERDAERLYELIWRQFVAGQMPAAEYT
STTITVSAGDFHLTTRGRIVRFDGYTRVQPTQGRKAEDTVLPDLSKGDALKLVTLEPAQH
FTAPPSRYGEAKLVSELEKRGIGRPSTYASIISTIQDRGYVRLENRRFYAEKMGEIVTDR
LENSFSDLLDYGFTASMEENLDSVADGKLDWRQLLDNFYGDFKQRVQRAELPEPEGMQSN
APTMTDIPCKACGRPMQIRTASTGVFLGCSGYALPPKERCKETVNLISGDDVVDVDADDE
AESRLLRSKHRCKTCNAAMDSYLIDEERKLHVCGNNPDCSGFEVELGKYKIKGYDGPILE
CDKCSNEMQLKTGRFGKYFGCTNSECKNTRKLLRSGEPAPPKMDPVQMPELICDKVEDHY
VLRDGAAGLFLAASQFPKHRETRAPLVRELLPHTAEIDPKYTFLFDAPTEDGDGNPAQIR
YSRKTKEQYVMTEEDGKATGWKAFYDGGRWQVQEAPKRKPKAKAKAKTKAKAKVKAKTKA
KAASSEAS
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatctctcgtcatcgtcgagtcacctgcaaaggcccggactatcaataagtat
ctgggcaatgactttgttgtgaagtccagtgtgggccacattcgtgatcttcctaccgcc
ggttctgcaaaaacaacagacgccaaggagcgcgctgccaaggccgctcagacccgaaaa
atgtctccggacgaaaaggcggtacagaaaaagcaaagagcgcgagagcagcttgtgcgg
cgtatgggcatcgatccagaagaaggctgggcagcgaactatgagatcttacccggcaaa
gaaaaagttgtttctgaattgcgtaagctcgcggagacttccgacaccgtgtatctggcg
actgaccttgatcgcgagggtgaggctattgcatggcatttgcgtgaggcgataggcggt
gatgatgaccggtatcagcgcgtggtctttaacgaaatcaccaaaaaggcgattcaggag
gctttttcccagccatcgagaattgatcaggcgcgggtaaatgcccagcaggctcggcgt
tttctggatcgtgttgtgggttacatggtgtcgcctttgctatgggccaaagtggctcga
ggtctctctgcgggacgtgtgcaatcggtggcggtgcgcttgattgttgagcgtgaaaaa
gagattcgagcttttattccggaagagtattgggagatccatgctgagctggaaaatagc
gctgcagaaaaagcgcgttttgaggttcgtcgtctgcggggcgaaaaattccgccctgac
aacgaaaaagacgccatggccgcgcgtgatgcccttgctgaagctgactatgttgtcagt
gatcgcgaagacaagcctacgcgctccaagccaccggctccgtttatcacctcgacgctt
cagcaggcggcaagtacccgactgagctttagcgtgaagaaaaccatgatgctggcccag
cgactctacgaagcgggttacatcacttacatgcgaacggattcaacaaatttgagcgcg
gacgcggttgctgcctgccgggattacatcaaaggtaactttcccaagcagtatttgccc
gatgaggccgcacggtattcctccagtgataacgcgcaagaggctcacgaagccattcgt
ccgtcagacgtcaatgtgcttcaggggcatttgcagaacatggagcgcgatgctgagcgt
ttgtacgaactgatctggcgtcagtttgtggccgggcagatgccggctgcagagtacacc
tctactacgattaccgttagcgccggagattttcatctgaccactcggggccgtatcgtg
cgctttgacggctacacgcgggtgcaaccaacccaggggcgcaaagctgaagacacggtg
ctgcctgacctgtcaaagggtgatgccctcaagttggtgactctggaacctgctcagcac
ttcaccgctccaccatcgcgttacggcgaagccaaactggtgagcgagctggagaagcgc
ggaatagggcgtccatccacctacgcatcgattatttctacgattcaggatcgcggatac
gtgcgattagagaatcgtcggttctacgccgagaaaatgggtgaaatcgtcaccgatcga
ctggagaacagcttcagtgatcttctggactatggctttaccgccagcatggaagagaac
ctggactcggttgccgacggtaagctggactggcgtcagctgctcgacaatttttacggt
gacttcaagcagcgggtgcagcgggcggagctgcctgagcctgagggtatgcagtccaac
gcgccgacgatgacagatattccctgcaaagcctgcggtcgtcccatgcagattcgcaca
gcgagcaccggagttttccttggctgttctggctacgcattgccaccgaaagagcgctgc
aaggaaaccgtcaatctgatttccggggatgacgtcgtcgacgttgatgccgatgacgag
gcagaatcacggctccttcgtagcaagcaccgttgcaaaacatgcaacgcggcaatggat
agctacctcatcgacgaggagcgaaagctgcacgtttgtggcaacaatcctgattgctcc
ggttttgaggtggagctaggcaagtacaagattaagggatacgacggccccatcctggaa
tgcgacaagtgcagtaatgaaatgcagctcaagaccgggcgttttggcaagtattttggt
tgtacgaatagcgagtgtaaaaacaccagaaagctgcttcgaagtggtgagccggcgccg
cccaagatggatcccgtgcaaatgccggagctgatctgcgataaggtagaagaccactac
gtgctccgcgatggagcggccgggctcttcctggctgcgagccagtttcccaaacatcgt
gaaacccgcgcgccactggtgcgggaactgctgccccacacggccgaaatcgaccccaaa
tacacgtttttgtttgacgcaccaaccgaggacggagacggcaatcctgcgcagattcgc
tatagccgaaaaaccaaagaacagtatgtgatgaccgaagaagacggcaaagcgacgggc
tggaaggcgttctacgatggtgggcgctggcaggtgcaagaggcgcccaagcgcaagcca
aaggccaaagccaaggcaaagaccaaggccaaggctaaagtaaaggcaaaaaccaaagca
aaggccgcgagctctgaggcgtcctga
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