Congregibacter variabilis: R0135_04670
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Entry
R0135_04670 CDS
T10777
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cvb Congregibacter variabilis
Brite
Enzymes [BR:
cvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
R0135_04670 (hrpA)
Messenger RNA biogenesis [BR:
cvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
R0135_04670 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
WOJ94457
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Position
complement(1037919..1041671)
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AA seq
1250 aa
AA seq
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MSTSDTPQVVREIPALTYPADLPVAEHRQEIADALREHQVVIVAGETGSGKTTQLPKICL
ELGRGRVQRIGHTQPRRLAARTVAQRIAEEVGQPLGELVGYQVRFQEYLGERTAVKLMTD
GILLSEMQRDRDLRQYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVLVTSATIDLE
RFSEHFSGAPVIEVSGRSYPVSTHYLPRDSSDSEDLLRQVASVVKEVQAGVHGSPGDMLV
FLSGERDIRDVARQLRGAEGLDVLPLYARLSQGEQARVFGRGSSRGLRVVLSTNVAETSV
TVPGIRFVIDPGEARISRYSYRTRVQRLPIEPVSRASADQRRGRCGRVGPGVCLRLYTEE
DYLNRPEFTDPEIKRSNLAAVVLQMLQLGLGDISRFPFLEPPDNRLIRDGYRLLDELGAV
NQREQLTRLGRRMAALPIDPTLSRMVLAAQEFSVLPEMLVIASALSIQDPRERPADRQSQ
ADQSHARFTDPRSDFMSLLNLWRYYEEQRQTLSENKLRKLCKREYLSWLRMREWRDVHRQ
ISIACRSQGLKPALEIALETNYAGVHRALLTGLLGNIAQQDERREYLATRNRRLQLFPGS
ALYRKAPKWLVAGEIVETQRVYARTAAAIEPQWLMQVNPSLLKHQYYEPRWQREQGRVVA
WRRTTLFGLTISDRVAVHYAKIDPELCRELLIREGLIAGRWSKPPAFLKHNLRLQREVED
LESRARRRDLLVDEDTLFKFYDELLPGLATNTTSLLAWIKEDESRSSVLKLRRDQLLTRD
PGAVIDAFPDRLEWQSQSYKLSYQFSPGKEADGVSITVPVALLNRLPRFRLEWLVPGVLR
EKCIALLKGLPKPVRKQMVPVPDWADRALQYMKPEDRPLSEALGAAVKQAGGPSIAAGDW
PDVVDDYYRMNLRVVDEKGKLLAQGRDVDLLISEFQEATRAQLTTEDGNSPARTGLIVWD
FPVLDREYGFKQAGVDILAYPALRDAGDSVSIELFDYPGEALLAQRRGLARLLMLSAKPL
FRDFRKRLLKDNATALLLAALDVSRDDLLDEVLPTLALNASGLLDGDCRDKDSFDAASQK
MSRAAVGLGNDLEAQLSNTLSAMVDASRLLQRYKGQYAEAKQNIAAQRKFLLSGAALFGL
ASDEFRHFPRYAKAMAVRAERLAANYQKDQEHQATLATLEAPMFELLKAVPGAAQLSPSL
STFQIMLQELRVSLFAQHLGTSRPVSVKRLLAQWALVDAWYQRSAGRTPE
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctcggatacgccacaggtagttcgggagatacccgcactcacataccctgcg
gatcttcctgtcgcggagcatcgacaggagattgccgatgcactgcgggagcatcaggtg
gtgatcgtggccggcgaaacaggttcgggaaagaccacccaacttcccaagatttgtctc
gaattggggcggggtcgtgtccagcgtattgggcatactcagccccgtcgtcttgccgcc
cgcactgtggcccagcgtattgccgaggaggtggggcagcccctgggtgagttggtcggt
tatcaagtgcgcttccaggagtatttgggtgagcgtacggcggttaagttgatgaccgac
ggaatcttgttaagtgaaatgcagcgcgaccgggatttgcgtcaatacgacactttgatt
atcgatgaggcgcacgaacgcagtctgaatatcgatttcatccttggttatttaaaacgc
ctgctgccgcgtcgacccgatctaaaggttttggtgaccagtgccacgatcgatctggag
cggttctccgagcactttagtggcgctccggtgatcgaggtttcgggacgcagctaccct
gtgagcacgcattatcttccccgggacagcagtgattcggaggatttattgcgccaggtg
gcgtcggtggttaaggaggtgcaggcaggcgttcacggtagtcctggcgatatgctcgta
tttttgtcgggcgagcgggatattcgtgatgtagcaaggcaacttcgcggtgcagagggt
cttgatgtactgcctctctatgctcggctgagtcagggcgagcaggctagggtattcggt
cgcggcagttcccggggcttgagagttgtgttgtcgacaaacgtcgctgagacctcggtc
acggtgcctggcattcggtttgttatcgacccgggtgaagcgcgcattagtcgttactcc
taccgcacgcgagtacaacgtttacctattgaacctgtatcccgggcgagcgccgaccag
cggcggggacgctgcggaagggtggggccaggggtgtgcctgcgcctgtacaccgaagaa
gattatctgaaccgcccagagttcaccgatcctgaaatcaagcgcagtaaccttgcggcg
gtggtactacagatgctgcagttgggacttggcgatatttcaaggtttccttttttggag
cccccggacaaccgtcttattcgcgatggttacagactcctggacgaattgggggcggtc
aatcagcgtgagcagttgacgcggctgggacgacgcatggcagcgctacctatcgatccg
actttgtcgcgcatggtgcttgccgcacaggagttctctgtcctgccggaaatgcttgtg
atcgccagtgccttgtccattcaggatccccgggagcgtccggccgaccgccaatcgcag
gctgatcagtcccatgcccgttttacagatccgcgctccgattttatgagtttgctaaat
ctctggcgttactacgaagagcagcgccagacgctcagcgaaaataaactccgtaaactc
tgtaagcgcgagtacctgtcctggctgcgcatgcgtgagtggcgcgacgtacatcgccaa
atcagcattgcctgtcgcagccagggactcaagccagctctggagattgcactggagacg
aattatgccggcgttcatcgtgccctgcttaccggtctgctgggtaacattgcgcaacag
gacgagcgtcgggagtatttggcaacgcggaaccgacgtctgcagttgtttccgggttca
gcgctataccgtaaagcaccaaaatggctggtggccggcgaaatagtagagactcaacgt
gtctacgcccgaacggcggccgctatcgagccgcagtggcttatgcaggtgaatccatct
ctgctgaaacaccaatattatgaaccgcgatggcagcgcgagcaggggagggtcgtggcc
tggcgacgcactacgctgtttggtctcacgatcagcgatcgcgtcgctgtgcactacgcc
aaaatagacccagagctttgtcgcgagctgctgatccgtgaaggcctgattgccggacgt
tggtcaaagccgcctgcgtttctcaagcacaatttacgtctccaaagagaagtagaagat
cttgaatctcgtgctcgtcgccgcgatctgctggtcgacgaagacacgctgtttaaattt
tacgatgagttgctgccaggtcttgcgacaaatacgacgtccttgcttgcgtggataaag
gaggatgaatcccggagcagtgtgcttaaactgcgccgggatcagttgctcactcgggat
cccggggccgtgattgacgcttttcccgaccgtttggaatggcagagtcagagttacaaa
ctgagttatcagttctcgccgggtaaggaagcggatggcgtgtctattactgttcccgtg
gcgctgcttaatcgcttaccccgctttcgactggagtggttggtgccgggtgttttgcgt
gaaaaatgcatcgctctactcaaaggtttaccgaagcccgtgcgtaaacagatggtgccc
gtgcctgattgggcggaccgcgctttgcagtatatgaagccggaggaccgccccttgtca
gaggcattgggagctgctgtaaaacaagccggtgggccgagcatcgcagctggcgattgg
ccggatgttgtcgatgactactaccggatgaatttgcgcgtagtggatgagaaggggaag
ctgctggcccaggggcgggacgttgatttactgatcagcgagtttcaggaagcgacgcga
gcccaactaacgactgaggacggaaactcgcctgcacgcactggcctcatagtttgggac
tttccagtactcgatcgtgaatatggtttcaagcaagctggcgtagatattctcgcttat
cctgcgctgcgtgatgcgggcgacagtgtgagtatcgagctgttcgactatcctggcgag
gcgctattggcccagcgcagaggacttgcccgactgcttatgctctcggctaagcccctg
ttccgtgattttcgtaaacgattactgaaggacaatgccacggcactgttgttggcagcc
ctcgacgtttcccgggatgatttactcgacgaggtgctgcccacgctggcgcttaacgca
tccggtttgcttgatggtgactgtcgcgataaagatagctttgacgccgccagccaaaaa
atgtctcgagcagcggtagggcttggtaacgaccttgaagcgcaattgagcaacactctg
agtgccatggttgacgcttctcgcttacttcaacgctacaaagggcagtacgcagaagcg
aagcagaatatagcggctcagcggaagtttctcctgagtggcgctgccttatttggtctt
gcgagtgatgagtttcgacattttcctcgttatgccaaggctatggcggtccgagcagaa
cgtctggcagccaattaccaaaaagatcaggagcaccaggcgactcttgcgaccctggag
gcgccgatgtttgagcttctcaaagcagtgcccggcgccgctcaattgtctccgtccttg
tccacatttcagatcatgcttcaagagcttcgggtgtcactgtttgcgcagcaccttggt
acatcgcgcccggtgtccgtgaagcgcctgctggcgcagtgggctctcgtcgatgcctgg
tatcaacgaagcgccggacgtacgccggagtga
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