Congregibacter variabilis: R0135_06625
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Entry
R0135_06625 CDS
T10777
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0135_06625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvb03019
]
R0135_06625
Enzymes [BR:
cvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R0135_06625
Messenger RNA biogenesis [BR:
cvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0135_06625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
AAA_22
Peptidase_S78_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
WOJ94839
UniProt:
A0ABZ0I5P3
LinkDB
All DBs
Position
complement(1519543..1520877)
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AA seq
444 aa
AA seq
DB search
MLFKDLSLSAELLRAVEKQGYDEATPIQQKAIPLVLQGSDLLAGAQTGTGKTAGFTLPVL
QRLQSKYQEGQKSFPKVLVLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQK
LIKGVDIVVATPGRLLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKKR
QTLLFSATFSNEIKKLASEFLEKPEQIQVTPQNTATELVSQLVYPVDKKRKRELLSQQIG
EGNWQQVLIFTRTKHGANKLAEQLDKDGISAAAIHGNKSQGARTRALSDFKAGTIRALVA
TDIAARGIDIDKLPHVVNFELPNVAEDYIHRIGRTARAGQQGHAISLVCVDELKLLRDIE
KLLGKDIEKINLPGFDIDPSIKAEPIQNGRGGGRSNPRNNGRSAAPGRGRGQGSGRPGAG
GQNARRGSGGGDRARSSNGNRRSA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtgttatttaaagatctcagcctttcggctgaactactgcgcgccgtagaaaaacaaggc
tacgacgaagcaacccccattcaacaaaaagctataccgctggttcttcagggcagtgac
ctgctggccggggctcaaaccggtactggtaaaactgcaggttttaccctgccagtgctg
cagcgccttcagagtaaatatcaggagggtcaaaagagctttcctaaagtgctggtgctc
acgccgacgcgagagcttgcggcgcaagttcatgaaagcgtaagagactacggtcgttat
cttccatttcgttcagccgtaatctttggcggagttagcattaatccccagaagcagaag
ctcattaagggcgtagacattgttgtcgcgactcccgggcgtcttttggatcatgtacag
cagcgcagtattgacctgtccaagatcgagattctcgttttggatgaggctgaccgtatg
ctggatatgggtttcattcacgatattcggcgggtcatgaaagtgatccccaagaaacgt
cagacacttcttttctcggctactttctctaatgaaattaagaagctggcatcagagttt
ttggaaaaacccgagcagattcaggtcacgccacaaaacaccgcaacggaactggttagt
cagttggtttatccggtagacaagaagcgcaaacgcgagctgttatcgcagcagatcggc
gaaggtaactggcagcaggtgcttatttttacccgcaccaagcacggagccaacaaactg
gccgaacagcttgataaagatggcattagcgcggcggcgattcatggcaacaaatcgcag
ggtgcacgcacgcgggctctgagtgattttaaggccggtacgatcagagcactcgtcgcg
acagatattgcggcacgcggtatcgatattgacaagttgcctcacgtggtcaacttcgag
ctgccgaatgtggcagaggactatattcatcgcatcggtcgtacagctcgcgcgggtcag
caaggtcatgcgatttctctggtctgtgtggatgagcttaagctgcttcgcgatatcgaa
aagcttttgggcaaggatattgaaaagatcaatctgccgggctttgatattgaccctagc
atcaaagctgagccgattcagaacggtcgtggtggtgggcgaagtaatcctcgcaacaat
ggtcgcagcgctgctccagggcgtggacgggggcagggaagcggtcgtcctggagctggt
ggccagaacgctcgccgaggcagtggtggcggagatcgcgctcgatccagtaatggaaat
cgacgcagcgcctaa
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