Congregibacter variabilis: R0135_06680
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Entry
R0135_06680 CDS
T10777
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0135_06680 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvb03019
]
R0135_06680 (recQ)
03400 DNA repair and recombination proteins [BR:
cvb03400
]
R0135_06680 (recQ)
Enzymes [BR:
cvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R0135_06680 (recQ)
Messenger RNA biogenesis [BR:
cvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0135_06680 (recQ)
DNA repair and recombination proteins [BR:
cvb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R0135_06680 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
WOJ94849
LinkDB
All DBs
Position
1531111..1532877
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AA seq
588 aa
AA seq
DB search
MFGYPEFRSPQLEIINALSRGDDALVIMPTGGGKSLCYQIPALLRQGCAIVVSPLIALMQ
DQVEALQQLGVRAAFLNSSLDLSTARSIEQDWLDNRLDLLYVAPERLLQPRMLALLEQVT
PALFAIDEAHCVSQWGHDFREDYLQLSELHQRFPDVPRIALTATADARTRQEIAERLKLS
EAQHFLVSFDRPNICYRIALKDNPRAQLLRFLRDEHMQDAGIVYCLSRKRVNETASWLAD
QGFKALPYHAGLPAETRADNQRRFLREDGVIIVATIAFGMGIDKPDVRFVAHLDLPKTVE
AYYQETGRAGRDGQAADAWLVYGLQDVITLRQMLEQSQGSDSYKREEQHRLNAMLGLCEI
TTCRRQALLAYFDELRDKPCGNCDSCLSPVATWNGTEAAQMAMSAVYRTEQRFGVNHLID
VLRGTENDKVFQNDHHHLPTFGVGKALDARQWRSVYRQLVARGYLSVDVARFGALYLQES
ARAVLRGEVEILLRQDPKTSSAKRTTKNALPEHIDVGLWEALRECRRQLAEDQGIPPYII
FHDRTLQLICEQRPQNVDEFAAISGVGDRKRDKYAEAFLAVVKGNERS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgttcggctacccggaatttcgttccccgcagctggagattatcaacgccctgtcccgt
ggcgatgacgctctggtcatcatgcctacaggtggcgggaagtcattgtgctaccagata
cccgccctgctgcgacaaggctgcgcaattgtcgtctcgcccctcatagcgctcatgcag
gatcaggtagaggcgcttcaacaactaggtgtgcgggctgcgttcctcaactcgagtctt
gatttgagtaccgcgcgatcaattgagcaggactggctggataatcgactggatttactc
tatgtggctccagaacgactgctacagccacggatgctggcgctccttgagcaggtaacc
cccgcccttttcgctatcgacgaagcccactgcgtatcccaatgggggcatgattttcgt
gaagactatttgcagctcagtgaattacatcagcgctttcccgatgttccccgcatcgcg
cttacggctaccgctgacgcccgcacccggcaagaaatcgcggagcgactgaagttaagt
gaagcgcaacattttttagtcagttttgatcgacccaacatttgttatcgcattgcgcta
aaggataatccccgggctcagctgctgcgttttttacgcgacgagcatatgcaagatgcg
ggaatcgtttactgtctgtcacgtaagcgagtcaatgagaccgcaagctggctcgctgat
cagggcttcaaggctctgccttaccacgcaggactgccggccgagacccgcgccgataac
cagcgtcgcttcctccgggaagacggcgtcattatcgtcgcgactatcgcctttggcatg
ggcatcgacaaacccgacgtgcgctttgttgcccatctggatttacccaaaaccgtggaa
gcctattatcaggaaaccggtcgagcgggacgcgatggacaagcagcggatgcatggctg
gtatatggccttcaggatgtaatcaccctgcgtcagatgctggagcaatctcaaggtagt
gatagctacaaacgcgaagaacagcaccggctgaatgccatgcttggcctgtgcgaaatc
accacctgtcgccgccaggctctgctggcttacttcgacgagttgcgcgataagccctgt
gggaactgcgacagctgcttgagccctgtggccacctggaacggcacggaagcagcacaa
atggccatgtccgcggtttatcgcacggaacagcgctttggcgtaaatcaccttatcgac
gtgcttcggggaaccgagaacgacaaagtgtttcagaacgatcaccatcatttgcctacc
tttggtgtgggcaaggcactggatgcccggcagtggcgctcggtttatcgacaacttgta
gctcgggggtatctgagcgtcgatgtagcgcggtttggcgctttgtatttgcaggagtcg
gcacgcgccgtcctgcgcggcgaagtagaaattctgttgcgacaggacccaaaaaccagc
tctgcgaagcgaactaccaaaaacgcacttccagaacacattgatgtaggcctctgggag
gccctgcgcgaatgtcgacggcaattagcggaagatcagggcataccgccctacatcatc
tttcacgatcgaaccctgcaactcatttgcgaacaacgacctcaaaatgtcgatgaattt
gccgctatctctggcgttggcgaccgtaaacgagacaagtacgccgaggcgtttttagcc
gtggtcaaaggcaatgagcgaagctaa
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