Congregibacter variabilis: R0135_08665
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Entry
R0135_08665 CDS
T10777
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0135_08665 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvb03019
]
R0135_08665 (pnp)
03016 Transfer RNA biogenesis [BR:
cvb03016
]
R0135_08665 (pnp)
Enzymes [BR:
cvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
R0135_08665 (pnp)
Messenger RNA biogenesis [BR:
cvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R0135_08665 (pnp)
Transfer RNA biogenesis [BR:
cvb03016
]
Prokaryotic type
tRNA degradation factors
R0135_08665 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
S1_2
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
SPATA25
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
WOJ91866
LinkDB
All DBs
Position
complement(1977850..1979982)
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AA seq
710 aa
AA seq
DB search
MNPVTKTFQYGGQTVTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAV
HYIEKAYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVICTVMSAD
KHIDPDIPAMIGTSAALAISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPSSKLEMVVA
GTEDAVLMVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELVAEAGKPSWNWEAPAVDE
ALLSAVDDKVKDDLGEAYRITDKSERYARVGEIRESCVAQLAVEDGPSADLVKDYFKKVE
KSLVRKRIISGEPRIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRD
SQIIDALEGERRDPFMLHYNFPPYSVGEAGRVGFTSRREIGHGRLARRGLAAVLPDLEEF
PYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLTDI
LGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNAVL
AAPRTVTSENAPSMVTLKVDSDKIRDIIGKGGAMIRSITEHSGATVDIEDDGTVRVFGQD
QASRDKAVAMIEEITAEAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQIANERVEN
VSDHLSEGQEVRVKVLDVDQRGRIKLSIKELLEDEASPAEAAPAEAASDD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccagttactaaaacctttcagtatggcggtcagaccgtcacgctggaaacaggc
cgcatcgcccgtcaggcgagtggcgccgtgcttgttactgtcgaaaacaccagtgttctg
gtgaccgttgtcgctgagaagacagctcgcgaaggacgcgacttcttcccgctggctgtg
cactacatcgagaaagcctattctgtgggcaagatccccggtggttttttcaagcgtgaa
gcacgccccagtgaaaaagagacactgacctcacgtctgatcgaccgtcctattcgtccg
ctgtttcctaatggcttcatgaatgaggtacaggtaatttgtaccgttatgtctgcggat
aagcatatcgatccagatatccctgcaatgattggtacttctgctgccctggcaatttct
ggttgcccctttaacgggcctatcggtgctgctcgagtgggcttcaacgatgccgagggt
tacattcttaaccccacgtatgaccagctccctagcagcaagcttgagatggttgttgct
ggtactgaagatgcggtactcatggttgagtcgcaggctgaccagttgactgaagatcag
atgctgggcgcggttttgttcgcccatcaggaaatgcaggtcgttatcaaagcggtgcag
gaacttgttgcagaagctggcaagccaagctggaattgggaagcacctgccgttgacgaa
gcgctgcttagcgctgttgatgacaaagtgaaggacgatcttggcgaagcctaccgaatt
actgacaagtctgaacgttacgcccgagtcggtgagattcgtgaatcttgtgttgcacag
ctggcggtagaggacggccccagtgccgacctggtcaaggactacttcaagaaagttgaa
aagtccctggttcgcaagcgcatcatttccggtgagccgcgtattgatggtcgtgataca
cgcactgtgcgtcaaattgcctgcgaagttgatgttctggcaaaagctcacggttccgcc
ctgtttacccgtggcgaaactcaggctatcggtgctgtgactctgggttctacccgtgat
tcacaaatcattgatgcgctggaaggcgaacgtcgcgatccgttcatgctgcactataac
ttccctccttattcagtaggcgaagcagggcgtgttggcttcaccagtcgccgagagatc
ggtcatggtcgtttggctcgtcgtggccttgctgcggtactgccggatctggaagagttt
ccatacactattcgcgttgtctcagagatcaccgagtcaaacggttcaagctcgatggca
tcggtgtgtgtaggttctctggcgatgatgactgcaggtgtacctctaaaggcaccggtt
gctggtattgccatgggtcttgtgaaagaaggcaatcagtttgctgttctcacagacatt
ctgggtgacgaagatcacctcggcgacatggactttaaagtcgctggtacggctaacggc
gtaactgccctgcagatggatatcaagatcgaaggcatcactgagcagatcatggagatt
gcgctcgagcaggctatgcaggctcgtctgcacatcctcggtcagatgaacgctgtgctg
gctgcaccgcgtacggtaacctccgagaatgcgccaagcatggtgaccttgaaggttgat
tccgacaagattcgcgacatcattggtaagggtggtgcgatgattcgctccatcactgag
cactccggagctacagtagatatcgaagacgatggcactgtccgtgtattcggtcaggac
caagcgtcacgtgacaaagctgtcgcgatgatcgaagagatcactgccgaggcagaagtc
ggtgctatctataccggtaaggttgagcggatcgtcgactttggcgctttcgttaacatc
ctccccggcaaagatggactgctgcatatctcgcagatcgccaatgagcgcgtagagaat
gtttctgaccacttaagtgaaggtcaggaagtgcgcgttaaggttctggatgtagatcag
cgcggtcgtatcaagctgtctatcaaggaactgcttgaagatgaagcttcgcctgcagaa
gctgcccctgcagaagcagcgagcgacgactga
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