Congregibacter variabilis: R0135_15860
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Entry
R0135_15860 CDS
T10777
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R0135_15860 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvb03021
]
R0135_15860 (rpoA)
03400 DNA repair and recombination proteins [BR:
cvb03400
]
R0135_15860 (rpoA)
Enzymes [BR:
cvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R0135_15860 (rpoA)
Transcription machinery [BR:
cvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R0135_15860 (rpoA)
DNA repair and recombination proteins [BR:
cvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R0135_15860 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
WOJ93239
LinkDB
All DBs
Position
3553047..3554051
Genome browser
AA seq
334 aa
AA seq
DB search
MQSSVKELLTPRKINVAEKSKTRAQVTLEPLERGFGHTLGNALRRILLSSMPGCAITEVE
IDGVLHEYSAIEGVQEDVIEILLNLKGVALIMNGKDEAELVLSKEGEGPVTAADIQTDHD
IEICNPDHLICTLNSKSAVHMKLTVARGRGYSPADARENPEEETRSIGRLQLDATFSPVL
RVSYVVEAARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILNDQLRVFVDLQSETQAV
TSDAEDEVDPVLLRPVDDLELTVRSANCLKAENIYYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLESWPPASLRNDEKVLSA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcatcagttaaggaactattgactcctcgcaaaattaacgttgctgagaagagc
aagacgcgcgctcaggtcacattagagcctttggagcgcggcttcggccacacgctgggt
aatgccctgcgtcgcatcctgctatcgtccatgcccggctgcgcaatcactgaagttgaa
atcgacggcgttttacacgagtactcggctattgagggtgttcaggaagacgttatcgag
attttgctgaacctcaagggcgtagccctgatcatgaatggtaaggacgaagctgagctc
gttctgagcaaggaaggcgaaggtcctgttaccgccgctgatatccagactgatcatgat
attgagatctgcaacccagatcatctgatttgcacacttaacagtaaatcagcagtgcac
atgaagttgaccgtcgcgcgtggccgtggatattcacctgcggacgctcgtgagaaccct
gaagaagagacgcgctccatcggccgactgcagctggatgcgacattctctccagtactg
cgtgtttcctacgttgtggaagctgcgcgggttgagcaacggactgatttggacaagctt
gtacttgatcttgagactaacggaacgatcgatccagaagaggcgatccgtcgcgcggca
actattctgaatgaccagcttcgtgtgtttgttgatcttcagagcgagacgcaggcggtt
accagcgatgcggaagacgaagtcgatccagtattactgcgccccgtagacgacctggag
ctcacagtacgctctgctaactgtctcaaggccgagaacatttactacattggcgatctt
gtgcagcgcacggaagtagagctactgaagacgccgaatttgggtaagaagtcacttact
gagattaaagacgtgctggcctcgcgcggcttgtctctaggtatgcgacttgagagctgg
ccgccggctagcctgcgaaatgatgagaaggtgctcagcgcttaa
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