Congregibacter variabilis: R0135_16490
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Entry
R0135_16490 CDS
T10777
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0135_16490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvb03019
]
R0135_16490
03009 Ribosome biogenesis [BR:
cvb03009
]
R0135_16490
Enzymes [BR:
cvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R0135_16490
Messenger RNA biogenesis [BR:
cvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0135_16490
Ribosome biogenesis [BR:
cvb03009
]
Prokaryotic type
rRNA helicases
R0135_16490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
WOJ93363
LinkDB
All DBs
Position
3679694..3681505
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AA seq
603 aa
AA seq
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MTTPTTPGSFDELQLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTA
AFALPILARLNPKLSKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQ
LRQLERGVHVIVGTPGRVMDHMRRGSLDLSALTTLVLDEADEMLRMGFIDDVEWILEKTP
PERQIALFSATMPDAIRRIAKQHLNKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTR
ILETEDTDGVIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLKKGRLDI
LIATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLR
TIERVTGQKIESMELPTSEQVSDKRASRFKARITETLDTRDMGAARELVESYQQEFGVPI
IEIAAALVVMNEGAAPAIPAAEPARPSRERPARAERSPGRDRDQDRERKPKRPKDAAPRD
ADVGMDRYRIEVGRQHGVKPGNIVGAIANEAEVDAEYIGRIQIEEDHSFVDLPDGMPKEI
FKHLKSVWVSGQKLQISRATDNAAKPAKRGGAAGGPVKSDAGAKKDLGTKKKGPRKRKAP
PLS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccccaacgacccccggcagctttgatgagctgcaactacctgcatttttaatg
aaagcacttagcgatgtgggctatgagacgccttcggctatccagacgatgacaatacca
cctttgctggaaggcaaagacctggtgggtcaggcccaaaccggtaccggtaaaacggcc
gcttttgcattgccaattttggctcgcctgaatcccaagttgagtaagcctcaggcattg
gtattggcccctacgcgggagctggccattcaggtagctgaggcctttcaaaagtatgcg
cgacacagcaagggctttaaggtgctgccgatttacggaggttctgattaccgtacacag
ctgcgccagctggagcgtggggtacacgttattgtgggcactcctggacgcgtgatggac
cacatgcgtcgcggctctttggatctgtcagcgctcacaactttggtgcttgatgaagcc
gacgaaatgttgcgcatgggctttattgacgacgtggagtggatcctcgagaaaacgcca
ccggagcgtcagattgccttgttttcggcgaccatgccggatgcgatacgtcgcatagcc
aagcagcatttgaacaagcctgaagaaattaccatcaaacttaagaccgtcaccaacgcg
tctattcgtcagcgtgtttggatgatgggcggcatgcacaaactggatgcgcttactcga
attctcgagaccgaagacaccgacggtgtaattatttttgtgcgcacgcgaatagccact
caggagcttgcggataagctttctgctcggggatatgccacggcagctctgaatggtgac
atcgcgcagaatcaacgggaaaagaccgtcgagaacctcaagaagggccggctcgatatt
ttgattgccaccgacgtggcggctcgaggtctggatgtagagcgcatcagccacgtgatt
aactacgacattcccaacgatcccgaggcttatgttcaccggattgggcggaccggtcgt
gcgggtcgcaccggcgaggcgattctttttgcagctaatcgcgaacgtcgtttgctgcgg
accatcgagcgggtgaccgggcaaaagatcgagtccatggagttgcccacctcggagcag
gtaagcgataagcgcgcgtcacgctttaaggcccgtattaccgagacgctcgatacccgg
gacatgggtgcggctagggagctcgtggagtcctatcagcaggagtttggcgtgccgatt
attgagattgcggcagcgctagtagtgatgaatgagggagccgctccagctattccggca
gccgagcccgccaggccatcgagagaacggcctgctcgagctgagcgctctcccggtaga
gaccgcgatcaagaccgtgaacgcaagccgaaacgccctaaagacgctgcgcctcgggat
gcggatgtgggtatggaccgttaccgcatcgaagttggccgccagcacggcgttaagccg
ggcaatatcgtaggtgcgatcgccaacgaggcggaggtggacgctgagtacattggccgc
attcagattgaagaagatcatagctttgtggacctgcctgatggcatgcctaaggaaatc
ttcaagcatctgaagtcggtgtgggtcagtggtcagaagctgcagatctcgcgtgccacg
gataatgcggctaagccagccaagcgcggcggagctgcgggtgggcctgtaaaaagtgat
gccggggccaagaaagacctcggcaccaagaaaaaggggccgcgaaagcgcaaggcccca
ccgttaagttga
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