Chromobacterium vaccinii: BKX93_03085
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Entry
BKX93_03085 CDS
T04565
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cvc
Chromobacterium vaccinii
Pathway
cvc03410
Base excision repair
cvc03430
Mismatch repair
cvc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BKX93_03085
03430 Mismatch repair
BKX93_03085
03440 Homologous recombination
BKX93_03085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvc03400
]
BKX93_03085
DNA repair and recombination proteins [BR:
cvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BKX93_03085
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BKX93_03085
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BKX93_03085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Glyco_trans_4_4
Motif
Other DBs
NCBI-ProteinID:
AOZ49086
UniProt:
A0A1D9LCS1
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Position
complement(688456..690144)
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AA seq
562 aa
AA seq
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MSQIVTREVPAELQHKLLGQGLTPLQARLYAARGIADSEELDYGLKGLLPYQNLKNAEAM
ACRLADAIAAKQRLLVVADYDADGATACAVAVKGLSMLGATIGFIVPNRFEYGYGLTPEI
VELAAQKRPDIIVTVDNGIASVAGVEAARARGIEVLVTDHHLPGDTLPDALIVNPNQPGC
EFPSKNLAGVGVMFYVLMALRVEMRRRGVFDEQTQPNLGVLLDLVALGTVADVVRLDRNN
RTLVENGLKRMRAGRMAPGIAALFRVAGRAHYKANTFDLGFTLGPRLNAAGRLDDMSLGI
ACLLASNEEQAVRLAQELDKLNRERRGIEAGMQDEALAALSGIDAGNRYTLTLYRDDWHQ
GVVGIVASRLKERFHRPVIVFAPGDEGEIKGSGRSIPGFHLRDALDLVYKRHPGLILKFG
GHAMAAGLSLDESRFAEFQQAFEAVARELMDEKQLTRMIETDGSLPARDVNLQLAETLAA
EVWGQGFPVPYFHDQFMVVNQKLVGDKHLKLRLAREGCEFDAMLFNHADWLPDRIQAVYQ
LIANEWQGRKELQVYLQHWAAA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaatcgtcactcgagaagtgcccgccgaactgcagcataagctgcttggccaa
gggctgaccccgctgcaggcgcggctgtacgccgcccgcggcatcgccgacagcgaagag
ctggattacggcctgaaaggcctgctgccgtatcaaaacctgaagaacgccgaagcgatg
gcctgccgcctggccgacgccatcgccgccaaacagcgcctgctggtggtggccgattac
gacgccgacggcgcgaccgcctgcgcggtggcggtgaagggcttgtcgatgttgggcgcc
accatcggcttcatcgtgcccaatcgcttcgaatacggctatggcctgacgccggagatc
gtcgagctggcggcgcagaagcggcctgacatcatcgtcaccgtcgacaacggcatcgcc
agcgtggccggggtggaggcagccagggctcgcggcatcgaggtgctggtgaccgaccac
cacctgccgggcgacaccttgccggatgccttgatcgtcaatcccaaccaacctggctgc
gaatttccgtccaagaatctggctggcgtcggcgtgatgttctacgtgctgatggccttg
cgggtggagatgcgccggcgcggcgtgttcgacgagcagacccagcctaatctgggcgtg
ctgctggacctggtggcgctgggcacggtggccgacgtggtgcggctggaccgcaacaac
cgcaccctggtagagaacggcttgaaacggatgcgggccgggcggatggcgccgggcatc
gccgccttgttccgcgtcgccggacgcgcccactataaagccaacacttttgacctgggc
ttcacgctgggtccgcggctgaatgccgccggccggctggacgacatgagcctgggcatc
gcctgcctgttggcgagcaatgaagagcaggctgtgcggctggcgcaggagctggacaag
ctcaaccgcgagcggcgcggcatcgaggccggcatgcaggacgaggcgctggcggcattg
tccggcatcgacgccggcaaccgctacacgctgaccctgtaccgcgacgactggcaccag
ggggtagtcggcatcgtcgcctcgcggctaaaggagcgcttccaccgccccgtcatcgta
ttcgcgcccggcgacgagggcgagatcaagggctccggccgctcgattcccggtttccat
ctgcgcgacgcgctggacctggtctacaagcgccacccgggcctgatcctgaagtttggc
ggccacgcgatggcggccggcctgagcctggatgaaagccgcttcgcggagtttcagcaa
gcattcgaggcggtggcgcgcgagctgatggatgagaagcaactgacccggatgatagaa
accgacggcagcctgccggcgcgggacgtcaatctgcagctggccgagacgctggcggct
gaggtgtgggggcagggcttcccggtgccgtattttcacgaccagttcatggtggtcaac
cagaaactagtgggcgacaagcacctgaagctgcgcctggcgcgcgaaggctgcgaattc
gacgcgatgctgttcaaccacgccgactggctgccggaccgcatccaggcggtgtaccag
ctgatcgccaatgaatggcaggggcgcaaggagctgcaggtctatctgcagcattgggcg
gccgcttga
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