Chromobacterium vaccinii: BKX93_04645
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Entry
BKX93_04645 CDS
T04565
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cvc
Chromobacterium vaccinii
Pathway
cvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKX93_04645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvc03019
]
BKX93_04645
Enzymes [BR:
cvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKX93_04645
Messenger RNA biogenesis [BR:
cvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKX93_04645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
ResIII
P-loop_SecA
CMS1
Helicase_C_2
HI1480
Motif
Other DBs
NCBI-ProteinID:
AOZ52729
UniProt:
A0A1D9LNB1
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All DBs
Position
1043246..1044493
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AA seq
415 aa
AA seq
DB search
MGLQPDLVQSALEQGYIQPTAIQSAAIPAILQGGDLLATAQTGSGKTAAFCLPLLQRWLA
KPRGILRQPQALILLPTRELAAQVGEILRDLAQALPRKLKVAVVYGGVSINPQMMALRGG
ADIVVATPGRLLDLLDHNALRLSAVKTLVLDEADRLLDLGFADELGSVLDRLPPTRQNLL
FSATFPPAVRALAEKLLNQPLRIDIEQTAATAPDILQRAIEVDADKRTLLLRHLLAANDW
DRVLVFVASRQAADRVADKLHRNGVPAAALHGDCSQSQRGQVLADLKSGRLRVLVATDVA
ARGIDIARLPLVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFVSADCAAHFRLIEKRQQ
LRLTRERIDGFEPTEAAAPAASMTDPDGNGGIKGKRKSKKDKLREAAARQQAGGD
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
ctgggcctgcagcccgatctggtccagtccgctcttgagcaaggctatatccagcccacc
gccatccagagcgccgccattcccgccatcctgcaaggcggcgacctgctggccaccgct
caaaccggctccggcaagaccgcggccttttgcctgccgctgctgcagcgatggctggcc
aaacctcgcggcatactgcgccagccccaggcgctgatcctgctgcccacccgcgaactg
gcggcccaggtcggcgagattctgcgcgacctggcgcaggccctgccgcgcaagctgaaa
gtggccgtggtctacggcggcgtgtccatcaatccgcaaatgatggcgctgcgcggcggc
gcggacatcgtggtggccacgcctggacgcttactcgacctgctggaccacaacgcgctg
cggctttccgccgtcaagacgctggtgctggacgaggccgaccgcctcctggacctgggc
ttcgccgacgagctgggcagcgtgctggaccggttgccgccgacgcggcagaacctgctg
ttctccgccaccttcccgcccgcggtgcgcgcgctggcggaaaagctgctgaaccagccg
ctgcggatagacatagaacaaaccgccgccaccgcgccggacatcctccagcgcgccatc
gaggtggacgccgacaagcgcaccctgctgctgcgccatctgctggcggcaaacgattgg
gatcgggtattggtattcgtcgccagccggcaggcggccgaccgggtggcggacaagctg
catcgcaacggcgtgcccgccgccgccctgcacggcgattgcagccaaagccagcgcggc
caagtgctggccgacctcaaatcgggccgcttgcgggtgctggtggccaccgatgtggcg
gcgcgcggcatcgacatcgcccggctgccgctggtggtgaactacgacctgccgcgctcg
ccggtggactacacccaccgcatcggccgcaccggccgggccggcgcccgcggcgaagcc
atcagcttcgtcagcgccgactgcgccgcccacttcaggctgatcgaaaaacgccagcag
ctgcggctgacgcgcgaacggatagacggcttcgagccgaccgaggccgccgccccggcc
gcctcgatgacggaccccgacggcaacggcggcatcaagggcaaacgcaagagcaagaag
gacaagctgcgcgaagccgccgcccggcaacaggcaggcggcgactaa
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