Chromobacterium vaccinii: BKX93_13010
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Entry
BKX93_13010 CDS
T04565
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cvc
Chromobacterium vaccinii
Pathway
cvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKX93_13010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvc03019
]
BKX93_13010
03400 DNA repair and recombination proteins [BR:
cvc03400
]
BKX93_13010
Enzymes [BR:
cvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKX93_13010
Messenger RNA biogenesis [BR:
cvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKX93_13010
DNA repair and recombination proteins [BR:
cvc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKX93_13010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AOZ50821
UniProt:
A0A1D9LHW4
LinkDB
All DBs
Position
complement(2815793..2817589)
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AA seq
598 aa
AA seq
DB search
MHDAVSILNHIFGYPEFRGQQQEIVEQVAHGGHALVLMPTGGGKSLCYQIPALLRDGVAI
VVSPLIALMQDQVATLQELGVAAACLNSATSQDEARDISRQARAGTLDLLYVAPERLLTP
RFQEFIASLKIALFAIDEAHCVSHWGHDFRPEYQQLGMLAEQFPHVPRIALTATADEQTR
LDIIHYLKLSEARVFLSSFDRPNLFYQVVEKHNAKKQLLDFIRQEHQGATGIVYCLSRKR
VEDTAQWLRENGIEALAYHAGMSHAEREANQRLFLREDGIVMVATVAFGMGIDKPDVRFV
AHIDMPKSPENFYQESGRAGRDGLPSASWLCYGLNDVVQLRQMIEGGEMAELQKQVELSK
LDAMLAFCETAGCRRQHILAHFGEASKPCGHCDNCLHPPITYDATEPVRKLLSCIYRVGQ
RFPTGHVIDVLLGRQNPSIGHHRHDQLSTYGIGKDMNQRWWRSIVRQLVARQLVQVDIAR
GQSLVLTDACRPLLKGEQSIYLRPLADEKKSRGSGGADRWLRTEREERLWQALRRWRRQV
ADEHNVPAYAVFSDRTLRDLVEKRPDSPAGLQRIYGLGELKLARYGEALLSCLREAQE
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcagtctccatcctcaatcatattttcggctacccggaattccgcgggcag
cagcaggagatcgtcgagcaagtggcccacggcggccacgcgctggtgctgatgcccacc
ggcggcggcaagagcctgtgctaccagatcccggctttgctgcgcgacggcgtcgccatc
gtggtgtcgccgctgatcgcgctgatgcaggaccaggtggccacgctgcaggaactgggc
gtcgcggcggcctgcctaaattcggcgacttctcaggacgaggcgcgcgatatctcgcgc
caggcgcgcgcgggcacgctggacttgctctatgtggcgccggagcggctgttgacgccg
cgtttccaggagttcatcgccagtctgaagatcgccttgttcgcgatcgacgaggcgcac
tgcgtcagccactggggccacgatttccggccggaataccagcagctgggcatgctggcc
gagcagtttccccatgtgccgcgcatcgcgctgaccgccaccgccgacgagcagacccgg
ctcgacattattcattacctgaagttgtccgaggccagggtgttcctgtccagcttcgac
cggcccaacttgttctaccaggtggtggaaaagcacaacgccaagaagcagctgctggat
ttcatccgccaggagcaccagggcgccaccggcatcgtttactgcctgtcgcgcaagcgg
gtggaagacaccgcgcagtggctgagggagaacggcatcgaggcgctggcctatcatgca
ggcatgagccatgccgagcgcgaggccaaccagcggctgttcctgcgcgaggacggcatc
gtgatggtggccactgtcgccttcggcatgggcatcgacaagccggacgtgcgcttcgtc
gcccacatcgacatgcccaagagcccggaaaacttctatcaggaatccggccgcgccggc
cgcgacggcctgccgtcggccagctggctgtgctacggcctcaacgacgtggtgcagctg
cggcagatgatagaaggcggcgagatggccgagctgcagaaacaagtggaattgagcaag
ctggacgcgatgctggccttctgcgaaaccgccggctgccgccgccagcacatcctcgcc
catttcggcgaggcgagcaaaccatgcggccattgcgacaactgtctgcatccgcccatc
acctacgacgccaccgagccggtgcgcaagctattgtcctgcatctatagagtggggcaa
cgttttcccaccggccacgtcatcgatgtgctgctgggacggcagaaccccagcatcggc
catcaccgccacgaccagctcagcacctacggcatcggcaaggacatgaaccagcgctgg
tggcgctccatcgtccgccagctggtggcgcgccaactggtgcaggtggatatcgcccgc
ggccagtcgctggtgctgaccgacgcttgccggccgttgctgaagggtgagcagagcatc
tatctgcgcccgctggccgacgagaagaagtcgcgcggcagcggcggcgccgaccgctgg
ctgcgcaccgagcgcgaagagcggctgtggcaggcgctgcggcgctggcgccgccaggtg
gccgacgagcacaatgtgccggcctacgcggtgttctccgaccgcacgctgcgcgatctg
gtggaaaaacgcccggatagcccggccggcttgcagcgcatctacggcctgggcgagctg
aagctggcgcgctacggcgaggcgctgctgagctgcctgcgcgaggcgcaggaatag
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