Chromobacterium vaccinii: BKX93_16510
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Entry
BKX93_16510 CDS
T04565
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cvc
Chromobacterium vaccinii
Pathway
cvc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cvc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BKX93_16510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvc03021
]
BKX93_16510
03400 DNA repair and recombination proteins [BR:
cvc03400
]
BKX93_16510
Enzymes [BR:
cvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BKX93_16510
Transcription machinery [BR:
cvc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BKX93_16510
DNA repair and recombination proteins [BR:
cvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BKX93_16510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AOZ51442
UniProt:
A0A1D9LJG4
LinkDB
All DBs
Position
3556489..3560679
Genome browser
AA seq
1396 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGIASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPMQYRQLLTEEDFLDKEDQYGEEFVAMM
GAEAVKELLKKLDLDSEIEGLRRELETTNSDTKIKKIAKRLKVLEAFQRSGMKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFHKLEVMGLASTIKAAKKLVEQEVPEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLATNNVLSPANGEPIIVPSQDIVLGLYYMTRDKVNGKGEGMVFADTKEVHRAYETR
QVELATRITVRLKEWEKDEQGEFQPVIKRYDTTVGRAILSDILPKGLPFEHINKALKKKE
ISKLINVSFRRCGIRDTVIFADQLMYTGFAYSTRGGISICVDDMQIPAKKVDLLGEANKE
VKEIEEQYRQGLVTQGERYNKVVDIWGRTGDKIAKAMMDELSKQKVLDREGKEVDQESFN
SIYMMADSGARGSAAQIKQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGFTMKAVLQGGDVIEALRDRIL
GRVTAVDVVDPSSGETVIEAGTLMDEQMVDLVDSLGIDEVKVRTAITCDTRYGLCAKCYG
RDLARGKRVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAASQVEGKSNGTVRF
SSQMRYVANTKGELIVITRSGEVVIHDDMGRERERHKVPYGATLMVTDGLVIKAGAVLAT
WDPHTRPIITEYAGRVKFENVEEGNTVAKQTDEVTGLSTLVVIDPKRRAGSQSKMLRPLV
KLLDDNGNEVKLAGSDASVSITFQVGAIITVRDGQDVGKGEVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLIITDLEGSGYENLIPKDKHVLVH
DGQVVNRGESIVDGPVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKINDKHIEVIIRQ
MLRRVVISDSGDTEFIQGEQVERADVLEMNDKMMAENKEPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHRTRRRQNLGLDAA
DSMLFDSAPAALESGD
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctctttaagcaagttacgcaagaagaagagtttgatgcgatc
aagatcggcatcgcctcgcctgacaagatccgttcctggtcttatggcgaagtcaagaag
ccggaaacgatcaactaccgcaccttcaagccggagcgcgatggcctgttctgcgcccgc
atcttcgggccggtgaaggattacgagtgcttgtgcggcaagtacaagcgcctgaagcat
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctgtccaaggtgcgccgcgag
cgcatgggccacatcgaactggccagcccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgttcgtggtgaccgatccgggcatgaccccgatgcagtaccgccagctcttg
accgaagaggacttcctggacaaggaagaccagtacggcgaagagttcgtcgcgatgatg
ggcgccgaagccgtcaaggagctgctgaagaagctggacctggacagcgaaatcgaaggc
ctgcgccgcgagctggaaaccaccaactccgacaccaagatcaagaagatcgccaagcgc
ctgaaggtgctggaggcgttccagcgttccggcatgaagccggaatggatgatcctggaa
gtgctgccggtgctgccgccggagctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgtctgaag
cgcctgctggaactgcgcgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggttgactcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagggcggtcgtttccgtcag
aacttgctgggcaagcgcgtcgactactccggccgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgctggaactgttcaagccgttc
atcttccacaagctggaagtgatgggcctggcgtccaccatcaaggcggccaagaaactg
gtcgagcaggaagtgccggaagtctgggacatcctggaagaagtgatccgcgagcatccg
gttctgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggtgaccaaatggccgtccacgtgccgctgtcgctggaagcgcaaatggaagcc
cgcaccctgatgctggccaccaacaacgtgctgtccccggccaacggcgagcctatcatc
gtgccgtcgcaggatatcgtgctgggtctgtactacatgacccgcgacaaggtgaacggc
aagggcgaaggcatggtgttcgccgacaccaaggaagtgcatcgcgcctacgaaacccgt
caggtcgagctggccacccgcatcaccgtccgcctgaaggaatgggaaaaggacgagcag
ggcgagttccagccggtgatcaagcgttacgacaccaccgtcggccgcgcgatcctgtcc
gacatcctgccgaagggcctgccgttcgagcacatcaacaaggcgctgaagaagaaagaa
atctcgaaactgatcaacgtttcgttccgtcgttgcggcatccgcgacacggtgatcttc
gccgaccagctgatgtacaccggtttcgcctattccacccgcggcggcatctccatctgc
gtggacgacatgcagatcccggccaagaaagttgacctgctgggcgaggccaacaaggaa
gtcaaggagatcgaggagcagtaccgccaaggtctggtgactcagggcgaacgctacaac
aaggtagtggacatctggggccgcaccggcgacaagatcgccaaggcgatgatggacgag
ctgtccaagcagaaggtgctggaccgcgaaggcaaggaggtcgatcaggaatccttcaac
tccatttacatgatggccgactcgggcgcgcggggttccgcagcccagatcaagcagctg
gccggcatgcggggtctgatggcgaagccggacggctcgattatcgagacgccgattacc
gccaacttccgcgaaggcctgaccgtactccagtacttcatctcgactcacggcgcccgt
aagggtctggcggatacggcgctgaagaccgccaactccggttacctgacccgtcgtctg
gtcgacgtgacccaggatctggtggtgatcgaggacgattgcggcaccagcaacggcttc
accatgaaggccgtgctgcagggcggcgacgtgatcgaagcgctgcgcgaccgcatcctc
ggccgcgtgaccgcggtcgacgtggtggatccgtcctccggcgagaccgtgatcgaagcg
ggcacgctgatggacgagcagatggtggacctggtcgacagcctcggcatcgacgaagtc
aaggttcgcaccgcgatcacttgcgacactcgctacggcctgtgcgcgaagtgctacggt
cgcgacctggcgcgcggcaagcgcgtcaacgccggcgaagccgtgggcgtgatcgccgct
cagtcgatcggcgaaccgggcacccagctgaccatgcgtaccttccacatcggtggcgcg
gcgtcgcgaaacgcggccgccagccaggtggaaggcaagtccaacggcaccgtgcgcttc
tccagccagatgcgctacgtggccaataccaagggcgagctgatcgtcatcacccgctcc
ggcgaagtggtgatccacgacgacatgggccgcgagcgcgaacgccacaaggtgccgtac
ggcgcgaccctgatggtgacagacggtctggtgatcaaggctggcgctgtattggccact
tgggatccgcacacccgtccgatcatcaccgagtacgctggccgcgtgaagttcgagaac
gtggaagagggcaacaccgtagccaagcagaccgacgaagtgaccggcctgtcgacactg
gtggtcatcgacccgaaacgccgcgccggttcgcagtcgaagatgctgcgtccgttggtg
aagctgctcgacgacaacggcaacgaagtgaagctggccggctccgacgcgtcggtgtcg
atcaccttccaggtgggcgccatcatcacggtgcgcgacggccaggacgtgggcaagggc
gaagtgctggcccgcatcccgcaggaatcgtcgaagacccgcgacattaccggtggtctg
ccgcgcgtggccgagctgttcgaagcccgttcgccgaaggatgccggcatgctggccgag
gtgaccggcaccgtttcgttcggcaaggacaccaagggcaagcagcgcctgatcatcacc
gacctggaaggcagcggttacgaaaacctgattcctaaggacaagcacgtgctggtccac
gacggtcaggtggtgaaccgcggcgaatccatcgtcgacggtccggtcgatccgcacgat
atcctgcgtctgcagggcatcgaggcgctggcccgctacatcgtccaggaagtgcaggag
gtgtatcgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcattcgccag
atgctgcgtcgcgtcgtgatctccgacagcggcgacaccgagttcatccagggcgagcag
gtggagcgcgccgacgtgctggaaatgaacgacaagatgatggccgagaacaaggagccg
gcgcagtacgaaaacgtgctgctgggcatcaccaaggcctcgctgtcgaccgactcgttc
atctccgcggcttccttccaggaaaccacgcgcgtgctgaccgaagcggccatcatgggc
aagcgcgacgatctgcgcggtctgaaggaaaacgtgatcgtcggccgtctgattccggcc
ggtaccggtctcgcttaccatcgcacccgccgccgccagaacctgggcctggatgcagcc
gattcgatgttgttcgactcggctccggctgcgctggaaagcggcgactaa
DBGET
integrated database retrieval system
