Chromobacterium vaccinii: BKX93_21100
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Entry
BKX93_21100 CDS
T04565
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cvc
Chromobacterium vaccinii
Pathway
cvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKX93_21100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvc03021
]
BKX93_21100
03019 Messenger RNA biogenesis [BR:
cvc03019
]
BKX93_21100
Transcription machinery [BR:
cvc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BKX93_21100
Messenger RNA biogenesis [BR:
cvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BKX93_21100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
AAA_22
AAA_5
AAA
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AOZ52250
UniProt:
A0A1D9LLS7
LinkDB
All DBs
Position
4563365..4564621
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AA seq
418 aa
AA seq
DB search
MHLSDLKHLHVSELVEMAISNEIDGANRLRKQDLIFALLKNQAKKGESIFGEGTLEVLPD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVN
GEAPENSKHKILFENLTPLFPTEQFKLERDIRAEENITGRIIDLIAPIGRGQRALLVAPP
KSGKTVMLQHIAHAITANHPDAVLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSVTRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNCEIHLDRKMAEKRIFPAMNI
NRSGTRREELLIPQDQLQRIWVLRKLLYPMDDLEAMEFLQDKIKATKSNQAFFDSMRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacttatctgatctcaaacatctccacgtatccgagctcgttgaaatggccatttcc
aacgagatcgacggcgccaaccggttgcgcaagcaggatctgatctttgcgcttttgaag
aaccaggccaagaagggcgagagcattttcggcgagggtacgctggaagtattgccggac
ggcttcggtttcctgcgcagcccggatacctcctatctggcgggccctgacgacatctat
gtcagcccctcgcagatccgccgcttcaatctgcataccggcgattcgatcgagggcgag
atccgcacgccgaaggatggcgagcgctatttcgcgctggtgaaagtggataaggtaaac
ggcgaggcgccggagaattccaagcacaagattctgttcgagaatctgacgcccctgttc
ccgaccgagcagttcaagctggagcgcgacatccgcgccgaagaaaacatcaccggccgc
atcatcgacctgatcgcgcccatcggccgcggccagcgcgcgctgctggtggcgccgccg
aagtccggcaagaccgtgatgctgcagcacatcgcccacgccatcaccgccaaccacccg
gacgcggtgctgatcgtgctgctgatcgacgagcgtccggaagaagtgacggaaatgcaa
cgctcggtgcgcggcgaagtggtgtcgtccaccttcgacgagccggccacccgccacgtg
caggtcgccgagatggtgatcgaaaaagccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggactctgtcacccgtctggcccgcgcctacaacaccgtggtgccggct
tccggcaaggtgctgaccggcggcgtcgacgccaacgcgctgcagcgtcccaagcgcttc
ttcggcgccgcgcgcaatgtggaggagggcggcagcctgaccatcatcgccaccgcgctg
atcgataccggtagccgcatggacgatgtgatctacgaggaattcaagggcaccggcaac
tgcgaaatccatttggaccgcaagatggctgaaaagcgcatcttcccggcgatgaacatc
aaccgttccggcacccgccgcgaagagctgctgattccgcaagaccagctgcagcgcatc
tgggtgctgcgcaagctgctgtacccgatggacgacctggaggcgatggaattcctgcag
gacaagatcaaggccaccaagtcgaaccaggctttcttcgactcgatgcgccgctga
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