Carnobacterium viridans: LHA31_00180
Help
Entry
LHA31_00180 CDS
T08019
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
cvd
Carnobacterium viridans
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvd03019
]
LHA31_00180
03009 Ribosome biogenesis [BR:
cvd03009
]
LHA31_00180
Enzymes [BR:
cvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHA31_00180
Messenger RNA biogenesis [BR:
cvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHA31_00180
Ribosome biogenesis [BR:
cvd03009
]
Prokaryotic type
rRNA helicases
LHA31_00180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NAT10_TcmA_helicase
AAA_22
Microtub_bd
PhoH
Motif
Other DBs
NCBI-ProteinID:
UDE95270
LinkDB
All DBs
Position
27644..28993
Genome browser
AA seq
449 aa
AA seq
DB search
MEHTFEKFGLQPFLIDAINEIGFKKPTEVQEKLIPAIKSGKSVIGQSQTGSGKTHTFLLP
LLNKIDPSRKEVQVVITSPSRELAEQIYQAALQLVEKAPTKIIVQNFVGGTDKKRQMTKL
AGVQPHVVIGTPGRILDLVSEKALLIYTSPVLVIDEADMTLDMGFLTDVDQIASKLPEKL
QMLVFSATIPIKLQPFLKKYMSNPLFEQIQPKEIISPTIENWLISTKGKDRIDVIYELLT
IGQPYLVMIFANTKTKVDELADGLKSRGIKVAKIHGDIPPRERKRVMKQVQNLEYQFVVA
TDLAARGIDIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAITLYAPSDENLIVDIE
KLGIPFEPKMIQKGEIVDTYDRKRRTTRENTATDTVDPRLKSMISQTKKKVKPGYKKKMS
RAIKESSDKKRRVERRSQANAIKKANKKK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggaacatacctttgaaaagtttgggttacaaccttttttaattgacgcaataaatgaa
attggttttaaaaaaccgactgaagtacaagaaaaacttataccagctattaaaagtggg
aaaagtgttattggtcaatcacaaacggggtcaggaaaaactcatacatttttacttcca
ttactaaacaaaattgatccatcacgcaaagaagtgcaagtggtgatcacttctcctagt
agagaattagcagaacaaatttatcaagcagcacttcaattagttgaaaaagctcctact
aaaattattgtacaaaattttgtaggtggaacagataaaaaacgacaaatgactaaatta
gctggagttcaaccacatgttgtaattggaacaccaggaagaattttagatttagtatct
gaaaaagctttattgatttatacatctccagttttggttattgacgaagcagatatgacg
ttagatatgggattcttaacagatgttgatcaaatcgcaagtaagttaccagaaaagttg
caaatgcttgtattctcagcaactatcccaattaaactgcaaccgtttttgaaaaagtat
atgtctaatccattatttgaacaaattcagcctaaagaaattatttcgccaacgattgaa
aattggcttatttctacaaaagggaaagacagaattgatgttatttatgaattattgaca
ataggacaaccatatttggtcatgatttttgcaaatacgaaaactaaagttgatgaatta
gcggatggacttaaatctagaggaatcaaagtagctaagattcatggagatattcctccg
cgtgaaagaaaacgtgtaatgaaacaagtacaaaatcttgaatatcaatttgttgttgca
actgatttagctgcacgtggtattgacattgaaggtgtttcacatgtgatcaatgctgag
attccaagagaccttagcttctttattcaccgtgttggtagaactggaagaaacaatctt
aaaggaacagccatcacactatatgctccaagcgatgaaaatttaattgtagatattgaa
aaattagggattccttttgaaccaaaaatgattcaaaaaggtgaaatagtagatacgtat
gaccgcaaacgtcgtacaactcgtgaaaatacggctactgataccgttgatcctagactc
aaaagtatgatcagtcaaacaaagaaaaaagtaaaaccaggctacaagaaaaaaatgtca
cgtgcgattaaagaaagcagcgacaaaaaacgtcgtgttgaacgtcgtagtcaagctaat
gctattaaaaaagcaaacaagaaaaaataa
DBGET
integrated database retrieval system
