Carnobacterium viridans: LHA31_00890
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Entry
LHA31_00890 CDS
T08019
Symbol
addA
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
cvd
Carnobacterium viridans
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvd03400
]
LHA31_00890 (addA)
Enzymes [BR:
cvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LHA31_00890 (addA)
DNA repair and recombination proteins [BR:
cvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LHA31_00890 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_12
ResIII
AAA_30
MHB
Motif
Other DBs
NCBI-ProteinID:
UDE95392
LinkDB
All DBs
Position
complement(174874..178677)
Genome browser
AA seq
1267 aa
AA seq
DB search
MMNPLPLKPENSHFTDGQWQAIYEEGHNILVSASAGSGKTTVLVQRVIEKIKSGTNVDEM
LIVTYTEAAAKEMKARIQVAIQEAVTSESNMELKRHLTRQVTLIHQASISTLHAFCLQVI
RRYYYLINLDPIFRLLTDETEILLLKESVWEEVREELYGEEDTLFKDLTASYSNDRSDAG
LTDLVFSLYEFSRANPRPAVWLEQLSYLYQVEENDLTTGVLFKELLKPQILSVLDSLVEL
SQVAAQLGEGTEELKNQTDLVRGEWIALQEIQTYINEHNYQAAYNGCKNFEFARWKAIKK
GTDEAIKETAEEMKGLRDQYKARFKELANDYFSASPQEQIDLMLSAAPLVEEMARVTQLF
TEAFRQRKDERNLLDFNDLEHLTLQILAQFNEEDWVPTEASMHYRDKFKEVMVDEYQDIN
QLQENILRWLAHDQSDQGNLFMVGDVKQSIYSFRLADPGLFLKKYEQYAHHELGERIILA
ENFRSRGEVLQFTNLVFEQLMDKAVGQMDYDEAAKLVQGFTGFPELQKHQPELLIYEKGT
NDTEDEEEETESVNWDMRIEDKTEGELLMVGQKIQELIQTQFPIYDKRAKTTRPINYRDI
VLLTPTKKNNLVLMEMFKRLAIPLQVNDTQNYFQTTEITIMMSLLKVIDNPYQDIPLAAV
LRSPLVGLDENELASIRISQKTGDYFDALKTFYQTYPGVEKASRFTSHLYGKVDMFLKRL
NKWRELARRDHLVALIWMIYEDTSFLDYVGGMSSGKQRKANLHALYERAASYEKTSFKGL
FQFVRFIEKMQEKDKDLAEPTAISEDENAVRVMTIHASKGLEFPVVFVLDLTKKFNLQDI
KKSYIFNEQYGVGTDFKDLDRRIRYPSLPEIALKVEKKTKLLSEEMRKLYVALTRAEEKL
FLVGSYKDEAAAWKEWGVVSSHNPTILPADIRFTASSLMKWIGLSLVRHPSSQNEGISVS
ARNGAITNHSAHFSIHFYDESAIQEQLVSTDTGTDENWLEKLNQLQDTLSETEPKQRTVQ
KALELMNYIYEHEGASHTTSYQSVSEIKRLFEEPDSDQMVKIDINQPRNRNRYVEETLDR
PLFMAELTAPSNAEIGTATHSVMQAVDLSTAPTIETLEALIASLIKNGVLKEDVAAKVNI
EQVVEFFATSLGKLIIEFSKEVHREEPFSLLLEAEKLFTDMNGDAEDKILIHGIIDGYID
FEDHIVLFDYKTDRVSHYGPQSGEKMLEKYKGQMNLYRSALESILDKKVTETYLCLLDTG
EIISVPS
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacccacttccgctaaaacccgaaaacagtcattttaccgatggacaatggcag
gcgatctatgaagaaggccacaatatactggtgtctgcttcagcaggttcaggtaaaaca
acagttcttgtccaacgtgtgattgaaaaaataaaatctgggaccaatgttgatgagatg
ctgatcgtaacttatacagaagcagccgcaaaagaaatgaaagctcgaatccaagttgca
atccaagaagccgtcacatctgaaagcaatatggaattaaaaagacaccttactcgacaa
gtaactttgattcatcaagcgtcaatcagcacgctacatgctttttgccttcaagtgatc
cgtcgttattattatttgatcaacttagatcctatttttagactattgacggatgaaaca
gagattcttttacttaaggaaagtgtctgggaagaagtaagagaagagttatacggagaa
gaagacaccctttttaaagatttgaccgcttcgtattccaatgatcgtagcgatgcgggg
ttaacagacttggttttctctttgtatgaattttcaagagctaaccctagacctgctgtt
tggttagaacaattatcttatttataccaagtagaagaaaatgatttaacgactggtgta
ttatttaaagaactgttaaaacctcagattttatcagtattagacagtctggtcgagctt
tctcaagtggcagctcagctaggtgaaggtactgaagaactaaaaaatcaaaccgatttg
gttcgcggagaatggattgcgttgcaagaaattcaaacgtacatcaacgaacacaattat
caagcagcgtataatggctgtaaaaactttgaatttgctcgctggaaagcaatcaaaaag
ggaaccgatgaagcaataaaagaaacagctgaggaaatgaaagggttacgtgaccagtat
aaagctcgttttaaagaactagcgaatgattatttctctgcttctcctcaagaacaaatt
gatttaatgttaagtgctgctcccttggttgaagaaatggcacgtgtgacacaacttttc
acggaagcttttcgtcaacgcaaggatgaacgaaacctgttagattttaatgatttagaa
catttgactctccaaattctggctcagttcaatgaagaagactgggttccaactgaagct
tcgatgcattatcgagacaaatttaaagaagtcatggttgatgaataccaagacatcaac
caacttcaagaaaatatattgcgttggttagcccatgaccaatcagatcaaggaaacttg
ttcatggtaggggatgtgaagcaatccatttattcatttcgtttagctgatccaggatta
tttttaaaaaagtatgaacagtatgcacatcacgaattaggtgaacgaattatactggct
gaaaattttcgttcacgtggtgaagtgttgcaattcactaatttagtctttgaacaacta
atggataaagcagttggacaaatggattatgatgaagcagctaaactcgtgcaaggtttt
acaggttttccagaattgcaaaaacaccaaccggaactgttgatttatgaaaaaggtacc
aatgacaccgaagatgaggaagaagaaacagaatcggttaattgggatatgcggattgaa
gataaaacggaaggcgaattgttgatggtcggccaaaaaatccaagagttgatccaaacg
caatttccaatttatgataaacgggctaaaacaacacggccaatcaattatcgagacatt
gttttgttgacacccactaaaaaaaataacttggtattaatggaaatgttcaaacgactg
gctattccgcttcaagtaaatgatacacagaattactttcaaacgactgagatcacgatt
atgatgtctttgctgaaagtcattgataacccatatcaagacattcctttggctgcagtg
ttgcgttcgccacttgttggattagatgagaatgaattggcctcaattaggatcagccaa
aaaacaggggattactttgatgccttaaaaacgttttatcaaacttacccaggcgtagaa
aaagcgagccgttttacatcacatttatatggaaaagtcgacatgtttttaaaacggttg
aataaatggcgtgaacttgctcggcgagaccatttagtcgcactaatatggatgatttat
gaggatacaagttttttagactatgttggaggaatgagttcgggtaaacagcgcaaagct
aatttgcatgctttatatgaacgtgcagccagctatgaaaaaacaagttttaaaggattg
tttcaatttgtacgattcattgaaaaaatgcaagagaaagataaagatctggcagagcct
acagctatatctgaagatgagaatgctgttcgagtgatgacgatccatgcaagtaaagga
ttagagtttccggtcgtttttgtattagacttaacaaaaaaatttaatttgcaagacata
aaaaaaagctatatttttaatgaacaatatggagtggggacggactttaaagatttagac
cgtcgtattcgatacccgtctttaccggaaattgctttaaaagtggaaaagaaaacgaaa
ttgttatctgaagaaatgcggaaattatatgtagcgttgacacgtgcagaagaaaaatta
tttttagtgggttcatataaagatgaagcagccgcatggaaagaatggggtgtcgttagt
tcccataatccgactattttgccagccgatatccggtttaccgctagtagtttaatgaag
tggatcgggttatcccttgttcgtcatccttcaagtcaaaatgagggaatttctgtcagt
gccagaaatggtgccattaccaaccattctgcccattttagtatccacttttatgatgaa
agtgcgattcaagaacaattggtatcaacggatactggaacggatgaaaattggttagag
aagttgaatcagttgcaagatacactctctgagactgaacccaaacaacgcaccgttcaa
aaagcgttagaattgatgaattacatttacgagcatgaaggagcttctcatacaaccagt
tatcaatcggtttcagaaatcaaacgcctatttgaagagccagacagcgatcaaatggtt
aaaatcgatatcaatcaaccgagaaatcgaaatcggtatgttgaagaaaccttagatcga
ccactgtttatggctgaattaaccgctccttcaaatgcagaaataggaacggccacgcat
tccgtgatgcaagctgttgatttaagcacagctcctaccatagaaacacttgaagctctg
attgcttcattgatcaaaaatggcgttttaaaagaagacgttgctgcaaaagttaatatc
gaacaagtggtggagttctttgcaacgtcgttagggaaattgattattgaattttcaaaa
gaggttcatcgtgaagaacctttctcactcttattagaagctgaaaaactgtttacagat
atgaatggtgatgctgaagataaaatattgattcatggtattattgacggctatatcgac
ttcgaggatcacattgttctatttgactacaaaacagatagagtcagtcattacggacca
caatcaggtgagaagatgttagagaaatataaaggtcaaatgaatttataccgctctgca
ttagaatctattttagataaaaaagttactgaaacgtatctgtgtctactagatacagga
gaaatcatatctgttccatcataa
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