Carnobacterium viridans: LHA31_00895
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Entry
LHA31_00895 CDS
T08019
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
cvd
Carnobacterium viridans
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvd03400
]
LHA31_00895
Enzymes [BR:
cvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LHA31_00895
DNA repair and recombination proteins [BR:
cvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LHA31_00895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
UDE95393
LinkDB
All DBs
Position
complement(178674..182294)
Genome browser
AA seq
1206 aa
AA seq
DB search
MGLQFVLGRANRDKRSVLLDEIAESLTKKTEESIFYLVPDHIKFQAEMTVLENLSHYSQF
EKKPIMGMMHLQVFSFTRLAWYWLKDTAIYAKPQLTTTGLSMLIRKLLIEHEEELTIYRG
EVRKDGFVQQMTDLFLELRSGRIAQTDLDHMMFSLGTSPKEADFKLKLQDLSLIYQAFDA
ALLNKYIESEDIVSALIQKVEELDLSKTTFYIESYYQFTAQEQALILALMKAAKKVTIAL
TSDKAYAVEKPEMHNLFQTSGATYYKLYQLARQNNVPVYKDKLIQEIDEAYCGELNQLEE
FWVETSQITSTNNELLDNIDTMGNCIEIWAAENKQAEITHVAKEIRKLVATGDYRYKDIL
VLTRNMDDYLAIIEPLFSSHKIELFVDSAELMNQHPLIEVIDSLVSIYKRNWRYADVMRL
LRTELVIPISEGEEALSKERAQRVNQHVQRARQFRERVDVTENVLLSYGYEGYQWIKSDP
WHYTRYFYEDAEFQSDNDQRIEQIANSIKTDLTGLLIPFFNRLEKAQTSKDAAKELYVFM
ETIGVKDQIGFWRDQAIEDNDLEEARKHEQTWQTFLQLLDEYVEVLGEEPFNLDSFYAIL
MTGFDNATYSMVPPSIDQVTFSGIEGTRIGTAKVTFMLGVTDAHLPAKTENKSILTEEDR
DFFSQFLDDTKYLKPTVEAVMASEPFIAYQAFLDSSEKLIFSYPTSDETKNGPKLSPYVD
RIAKAFHLPIQAKLMGVTSLENPSDKELLDFVGTKKTTISQLLMILRKEQDQKGQLSVFW
QNLYSFFKRDKQVARDFNHLLVSLVKKNLPVPLRSTIATDLYGKDLYLSVSRLEAFYADH
YGHFLTYGLKLQERDVFELSPAGTGEFFHDALDHLFKQVIQKNLSFDQLTEDMLEQLTAE
VLTELYGKPKFSILSASNRMKYIRDQLGQTIKKMVWVIGNQSRRTNMKNIQTEVLFGQVA
NQTGIEGLSFPLNNGGTLHLRGKIDRVDAMNLGDDYYLSVVDYKSSAHKFNYQDAYYGLA
MQMITYLDTALQNAVGLIGHEAKPAGAFYLHVSNPFMKKGTFLDEDAYINELLKSYKMDG
LLLEDEDMLLSLDPTIEPTKASLVYPFNQLKSEALKSNKFVTLDEMTALRQHNQKLIVDA
GNKIVEGVNTLNPFYEKRQFIPTVNGPLRAVSQFDAMLPENNYRRMESLKREDILKKMQE
EEEDEE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgggattgcaatttgtattaggtcgtgcgaatcgtgacaagcgttcggtactattggat
gagatagcagaaagcctgacgaaaaaaacggaagagtctattttttatttagttccagac
catattaagtttcaggctgaaatgactgttttagaaaaccttagccattattcgcagttt
gaaaagaagccgattatgggcatgatgcatttacaagtattcagttttacacgattagca
tggtactggttaaaagataccgctatttacgctaagccacaattaaccacaactggctta
tcgatgctgattcgcaaattactgattgaacatgaagaagagttgaccatctatcgtggt
gaagttcgaaaagatggctttgttcagcaaatgacagatttatttttagaattacgcagc
ggtcggattgcacaaacagatttagatcatatgatgtttagtctaggtacttcacctaag
gaagccgattttaaattgaagttacaggatttatctttgatttatcaagcttttgatgca
gcattactgaataaatatattgagtctgaggatattgtgtccgcattgattcaaaaagtg
gaagagttggatttatctaaaaccacattttacatcgaaagttattatcaatttacagct
caagaacaagcgcttattttagcattaatgaaagctgcaaaaaaagtgacgattgcgctg
acatcagataaagcatacgctgttgaaaaaccggaaatgcataacttgtttcagacatct
ggagcaacttattataaattgtatcaactggcacgccaaaataatgttccagtctacaaa
gacaaactgatccaagagattgatgaggcctattgtggggaattaaatcaactggaagaa
ttttgggtagaaacgagccaaatcacctcaacaaacaatgagctgttagacaatattgat
acgatgggcaattgcatcgagatatgggcagcggaaaataaacaagcagaaatcacacat
gtggctaaagaaattcgcaaattggttgccactggtgattaccgttataaggatatttta
gtcttgactcgcaatatggatgattatttagccatcatagagccgttatttagtagtcac
aagatagagttattcgttgatagtgcagaactaatgaatcaacatccgcttattgaagtg
attgactctttagtcagcatttacaaacgcaattggcgatacgcagatgtgatgcggcta
cttagaacggagttagtgattccaataagcgaaggggaagaagctctttcaaaagaacgc
gcacaacgggtgaatcagcatgtgcaacgtgcacgacagtttagagaacgagtggatgta
acggaaaatgtgttattgtcttatggttatgaggggtatcaatggattaaatcagatcct
tggcactacacgcgctacttctatgaagatgccgagtttcaatcggacaatgatcaacgg
attgaacagattgccaattccattaaaacggatctgacaggactgttgattccatttttc
aaccgattagaaaaagcgcaaaccagtaaagatgctgcaaaagaactgtatgtatttatg
gaaactattggagttaaagaccaaataggcttttggagagatcaagcgattgaagacaat
gatcttgaagaagctcgcaaacacgaacaaacatggcaaacatttttgcagcttttagat
gaatatgtagaagtattgggagaggaaccgttcaacttggatagtttctatgcaatctta
atgactggatttgataatgcgacttacagcatggttccaccaagtattgatcaagtaacg
ttttcaggtattgaaggaacacgtatcggaacagcaaaagttacctttatgctgggagta
accgatgcccatttgccggctaaaacagaaaataaaagtattttaactgaagaagaccgg
gatttcttttcacaattcctagacgatacaaaatatttaaaaccaactgttgaagcggtt
atggcttctgaaccgtttattgcttatcaagcctttttagattcttctgagaaattgatt
tttagttacccaaccagtgatgaaacaaagaatggtccgaaattatcgccttatgtggat
agaatagcaaaagcgtttcatcttccaatccaagccaaactgatgggtgtcacatcacta
gaaaatccatccgataaagaattactggattttgttggaacgaaaaaaacgacgatcagt
cagctattgatgattttacgcaaagagcaagaccaaaaaggtcagttaagtgtattttgg
caaaacctttatagtttctttaaacgagataaacaagtggcgcgcgattttaaccattta
cttgttagtttagttaagaaaaatctgccagtacccttgagaagtaccattgcaacagac
ttatatggcaaagatctttatttatctgtttctcgtttagaagctttttatgcagatcat
tatggtcatttcttgacatatggattgaaattacaagaacgagacgtttttgagctgtct
ccagccggtacgggagaattctttcatgatgcgctggatcacttgttcaaacaggttatt
caaaagaacctcagctttgatcaattaacggaagatatgctggaacaattgactgcagaa
gttttaacagaactttacggtaagccaaaattctccattttaagtgcatcgaatcgtatg
aagtatattcgtgaccaactaggccaaacgattaaaaaaatggtgtgggtcatcggcaat
caaagccgacggacaaatatgaaaaatattcaaacagaagttttatttggccaagtcgca
aatcaaaccggcattgaaggattatcttttccacttaataatggtggaaccctacattta
cgtgggaaaatcgatcgagtggatgctatgaacttaggtgacgattattacctgagtgta
gtggattacaagtcaagcgcacataaattcaattaccaggatgcttattatggtctagcc
atgcaaatgatcacgtacttggatacggctcttcaaaatgctgttggattgattggacat
gaagctaaacctgcaggcgcgttttatttgcatgtatccaatccgtttatgaaaaaagga
acgtttttagatgaagatgcgtatatcaatgagttgttaaaatcctataaaatggatgga
ttgttgcttgaagatgaagacatgctcttatcactagatccaacgattgagccgacaaaa
gcttcacttgtgtatccttttaatcaattgaaaagtgaagctttaaaatcgaacaaattt
gtcacactagatgaaatgactgcgttacgccaacacaatcaaaaactgattgttgatgct
ggaaataaaatcgtcgaaggagtaaatacattaaatcctttctatgaaaaaaggcaattt
attccgactgttaatggaccattgcgtgcagtttcgcaatttgatgcaatgttgcctgaa
aacaattatcgtcggatggaatcgttaaaaagagaagatattcttaagaaaatgcaagaa
gaggaggaagatgaagaatga
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