Carnobacterium viridans: LHA31_00925
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Entry
LHA31_00925 CDS
T08019
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cvd
Carnobacterium viridans
Pathway
cvd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LHA31_00925 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvd03021
]
LHA31_00925 (rpoD)
Transcription machinery [BR:
cvd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LHA31_00925 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
MCM_WH_arc
Motif
Other DBs
NCBI-ProteinID:
UDE95398
LinkDB
All DBs
Position
complement(186872..187993)
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AA seq
373 aa
AA seq
DB search
MAEKKLTTKKAYDSEVKSLIKEYKAAGTIHYDVLTNKIATPFSLNAEKMDQLIQTVEDAG
VGVVGDDGGPTARQLKLKEMKAEREAEKPEDLTAPPGVKINDPVRMYLKEIGRVNLLTAA
EEVELAIKIEEGDQEARQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKF
DYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPT
PEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAAYEL
LKEQLEDVLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKLR
HPSRSKQLKDFLE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaaaaactgacaacaaaaaaggcgtatgatagtgaagtaaagagtttgatc
aaagagtataaagcagcaggaactattcattacgatgtgttaacaaataaaatagcaact
cctttttctttaaatgctgaaaaaatggatcaattgatccaaacggttgaagatgcaggt
gttggagtagttggagacgatggtggtccaacagctcgacaactgaaactcaaagaaatg
aaagctgaaagagaagcagaaaaaccagaagacttaacggctcctcctggagttaaaatc
aacgatcccgttagaatgtacttgaaagaaattggacgggtgaatttattaacggcagct
gaagaagtcgaactagcgataaaaatagaagaaggcgaccaagaagcacgtcaacgtctt
gcagaagctaacttacgtttagttgttagtattgccaaacgttatgttgggcgtggaatg
cagttcttagatttgatccaagaaggaaacatgggattaatgaaagctgttgaaaaattc
gactataaaaaaggatttaaattctcaacgtatgcgacttggtggattcgtcaagcaatt
acgcgtgcgattgccgaccaagcacgtacaattcgtattccggtgcacatggttgaaaca
atcaataaattgattcgtatccaacgtcaattgctgcaagatttaggccgcgaaccaact
cctgaagaaattggagcagaaatggatcttccaactgaaaaagttcgtgagattctaaaa
attgcacaagagccagtttctttagaaacacctattggagaagaagatgattctcattta
ggcgactttattgaagaccatgatgcgacaagtccagctgaaaacgctgcttatgaattg
ttaaaagaacaattagaggatgtactagatacacttacagatcgtgaagaaaatgtactc
cgtttgcgtttcggtttagatgatggacgtaaccgtactcttgaagatgtgggtaaagta
tttggcgtaacacgcgagcgtattcgtcaaatcgaagctaaagcacttcgtaaattacgt
caccctagccgttcaaaacaattaaaagacttcttagaataa
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