Carnobacterium viridans: LHA31_03555
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Entry
LHA31_03555 CDS
T08019
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cvd
Carnobacterium viridans
Pathway
cvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHA31_03555 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvd03019
]
LHA31_03555 (rny)
Messenger RNA biogenesis [BR:
cvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LHA31_03555 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
UDE95858
LinkDB
All DBs
Position
complement(717889..719448)
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AA seq
519 aa
AA seq
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MDFKSVAFAIVTLVVGLIVGYLVRKASHEKELAGARNTATGILEEAKREAETMKKEAMLE
AKDESHKYRTEIEAELKERRNEVLRQENRLLQREDNIDRKNDSLEKREHTLEANEERLSS
RQLHVNDLEKKAIELVEQQENELERVAALSREEARQLILKETENELSHELAVMVKDSEQK
AKEEADRKAKNLIALAIQRSAADQVSETTVSVVTLPNDEMKGRIIGREGRNIRALETLTG
MDLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIRE
IGEQATFDVGVHSLHPDLIKILGRLKFRTSYGQNVLSHSIEVAKLAGVMAAELGEDVTLA
KRAGLLHDIGKALDHEVEGSHVEIGAEIGMKYKENETVVNAIASHHGDVEATSVISVLVA
SADAISAARPGARSESLENYIHRLEKLESISNDFEGVEQSFAIQAGREIRIMVKPEKLDD
LAASKLARDVRNRIESELDYPGHIKITVIREIRTIEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaaagtgttgccttcgctatcgttactttagttgtcggtcttattgttgga
tatctcgtccgcaaagcaagccacgaaaaagaactagctggtgctagaaacactgcaact
ggaatattggaagaagcaaaaagagaagcagaaaccatgaaaaaggaagcgatgttagaa
gcgaaggatgaaagccacaaatatcgaactgaaattgaagcagagctgaaagagagaaga
aatgaagttctaagacaagaaaatcgtttgttgcaacgtgaagataacattgatcgcaaa
aacgatagcttagaaaaacgtgaacacacactcgaggcgaatgaagagagattaagttct
agacaactacatgttaacgatttagagaagaaagctattgagttggtcgagcaacaagaa
aatgaattggaacgagttgcagctttatcacgagaagaagcaagacaattgattttaaaa
gaaacagaaaatgaattgtctcatgaattagccgtaatggtaaaagattctgaacaaaaa
gcaaaagaagaagcagatcgaaaagctaaaaatttaattgcgttagccattcagcgttct
gcagctgatcaagtttcagaaacgacagtatcggttgtaacgttgcctaacgatgaaatg
aaaggccgtattataggtcgtgaaggtcgtaatatcagagcactagagaccctaacaggt
atggatttaattatagatgatacaccagaagcagttgtacttagtggattcgatccaata
cgtcgcgaaattgctcgaatgactcttgaaaaattgatccaagatggacgaattcatcca
gctcgaattgaagaaatggtagaaaaatcacgtaaggaaatggatgaaagaatcagagaa
attggagaacaagctacttttgatgtaggagtacattctttacatcctgatttaatcaaa
attttaggacgtctgaaatttagaacaagttatggtcaaaatgttttaagtcactctatt
gaagtggctaaactagctggtgtgatggctgctgaactaggagaagacgttacattagct
aagcgagcaggtctacttcacgatattggtaaggcactggatcatgaagttgaaggttca
catgttgagattggcgcagaaattggaatgaagtataaagagaatgaaacagttgttaat
gcaattgcttcacatcatggtgacgtagaagcgacatctgtcatttctgttttagttgct
tcagccgacgcaatatctgcagcgcgtcctggtgcaagaagcgaatcacttgaaaattat
attcaccgacttgaaaaattagaaagcatttctaatgatttcgaaggagtagaacaaagt
tttgcaatacaagctggtcgtgaaatccgcattatggtcaaacctgaaaaacttgatgat
ttagctgcaagtaagctagcgcgtgatgttagaaaccgtattgaaagtgaactggattac
ccaggacatattaagattacggttattcgcgaaataagaactatagaatatgctaaataa
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