Carnobacterium viridans: LHA31_04765
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Entry
LHA31_04765 CDS
T08019
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cvd
Carnobacterium viridans
Pathway
cvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHA31_04765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvd03019
]
LHA31_04765
Enzymes [BR:
cvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHA31_04765
Messenger RNA biogenesis [BR:
cvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHA31_04765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
SMC_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDE96044
LinkDB
All DBs
Position
962376..963647
Genome browser
AA seq
423 aa
AA seq
DB search
MLFNELELNQHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPIL
QNIMEEKTVGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQVIFGGVSQNPQTAAL
KRGTDILVATPGRLLDLIRQGFVKLNQVDFFVLDEADMMLDMGMLRDVRHIIRELPKKRQ
SMFFSATMPSEIEKLAGTILSNPVKVVVNPVSSTVEVIQQNVYRVAKTDKTNLLIYLLKN
KQVERSLVFSRTKHGANKIVKKLLQAGFSAEAIHGNKSQNARQQALENFKTMKTSVLVAT
DIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRDIEK
LSKRKVPVIKDHPYLLKEGTQAPTQQARKAVATRNSGTRAKSKQGRRGGQKSAQRPRVQT
KNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
ttgttatttaatgaattagaattgaaccaacacctattgcacgcactgaaagaagcaggt
tatacgaaagcaacgcctatccaagaggatgccattccgcatctgatgaacaacaaggac
ttgttgggttgtgcccaaactggtactggtaagacagctgcctttgctttacccatcctt
caaaatattatggaagaaaaaaccgttggaaaaggggccatcaaagccttaatccttgct
cctacacgtgaacttgccatacaaatcggtgatagtttccaaacatacgctaaatacctt
ccattgaatatccaagtaatttttggtggcgtttcccagaatcctcaaacagccgcgctg
aaacgtggaacggatatcctagtcgcgacgccaggcagacttttggaccttatcagacaa
ggatttgtcaaactgaatcaggttgatttcttcgtcttggacgaagccgatatgatgttg
gacatggggatgttacgtgatgtacgccatattatccgcgaattgcctaagaaacgtcaa
agcatgttcttttcagcaacgatgccgagtgaaatcgaaaaacttgcaggaaccatttta
tcaaacccggtaaaagtggtagtcaatccggtttcatcaactgttgaagtcatccaacag
aacgtttaccgcgtagccaagaccgacaaaactaacctacttatctatcttttgaagaat
aagcaggttgagcgctccctagtcttctccagaaccaagcatggcgccaataaaatcgtc
aaaaaacttttgcaagcgggtttctccgccgaagcgattcacggcaacaagtctcagaat
gcgcgtcagcaagctttagaaaacttcaagaccatgaaaactagcgttctcgtagcgaca
gatatcgcagcccgtggtatcgatgtgcctgagctttcgcaagttatccaatttgacttg
cctgaagttccagaaacctacgttcaccgtatcggccgtacagggcgcgcagggctaagt
ggaaaagctatctctttctgtgatgaaacagaatcagacttgttgcgcgacattgaaaaa
cttagtaagaggaaagttccagtcataaaagaccatccttatcttttgaaagaaggcact
caagcaccaacacagcaggcgagaaaagcagttgccacgcgcaatagtggaacacgcgct
aaaagtaaacaaggtcgaagaggcggtcaaaaatccgcacaaagacctcgtgtacaaacg
aaaaacacgtaa
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