Carnobacterium viridans: LHA31_04995
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Entry
LHA31_04995 CDS
T08019
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cvd
Carnobacterium viridans
Pathway
cvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHA31_04995 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvd03019
]
LHA31_04995 (rnr)
03016 Transfer RNA biogenesis [BR:
cvd03016
]
LHA31_04995 (rnr)
Enzymes [BR:
cvd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LHA31_04995 (rnr)
Messenger RNA biogenesis [BR:
cvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LHA31_04995 (rnr)
Transfer RNA biogenesis [BR:
cvd03016
]
Prokaryotic type
tRNA degradation factors
LHA31_04995 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UDE96077
LinkDB
All DBs
Position
complement(1007353..1009716)
Genome browser
AA seq
787 aa
AA seq
DB search
MNDKKALQEAILVFMKEHKKVSFQVSDISEGMGLTSAADFKVLVSSLAEMEREGKLFLNK
KGHFKLPSNDPVLTGTFRASDRGFGFVAIEDEEKDIYIPPNMTNFALDGDKVTVDIIKPA
EPWSDKGAEGKIKAIIERKFTQLVGEFYAYSEEGIEETGLYGYLDPQDKKITDIRVFIEA
QGIKPVDGSIVVVEITLYPDDEFPRSMQGIVKKVVGHINDPGIDILTIVYKHGIPTEFSP
EAIQQADDVPDKINESDFEGRRDLRDEVLVTIDGEDAKDLDDAVGLKLLDNGNYQLGVHI
ADVSYYVTEDSPLDKDAFERGTSVYLTDRVIPMIPQRLSNGICSLNPHVDRLTMSCVMEM
TPDGEIVGQDIFQSVIRTTERMTYTEVNEILTDKNPEIRKKYSNLVDMFELMENLHHTLE
KKRKSRGAIDFDTKEAKIIVDPEGKPLDIVLRERGVGERLIESFMLAANETVSEHFSKME
VPLIYRIHEQPDSDRMQKFMEFVTAFGITVKGTSQDVSPKTLQTVVNSVKGKPEEQVVST
MMLRSMKQAKYDVEPLGHFGLGAEYYSHFTSPIRRYPDLILHRLIRSYGEKGTGSAQKAK
WENRLPDIAEQTSKAERRAVDAERETDALKKTEFMADKVGEIYEGIIGSVLKFGLFVELP
NTVEGLVHISNMKDDYFNYIEEQMMLVGERTGVVYRIGQKVKVKITKADPETREIDFELV
PDPNAPKYDGPKRSTKGRGRGNSQTRGKDSGSKEKFSSYKPKGKESSKKKSKPFYKEVAK
KKKPKKK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacaaaaaagcattacaagaagcgattttagtttttatgaaagaacataagaaa
gtttcgtttcaagttagtgatatcagtgagggaatgggtttgactagtgcagccgatttt
aaagtcctcgtcagttcattagctgaaatggagcgagaaggtaaactctttttaaataaa
aaagggcattttaaattgccaagtaatgatcctgttttaaccggtactttcagagcaagc
gatcgtggttttggctttgttgcaatcgaagatgaggaaaaggacatttatatcccacct
aatatgaccaattttgcattagacggagataaagtaacggtagatattatcaagcctgcg
gaaccttggtcagataaaggtgctgaaggaaagataaaggctattattgaacgtaaattt
actcaattagttggggaattttatgcgtacagtgaagaaggaattgaagaaacgggctta
tacggctaccttgatcctcaagataaaaaaattacagacattcgtgtttttattgaagca
caagggatcaaaccggttgacggctctattgttgttgtagaaataacgttgtatccagat
gatgaatttccaagaagtatgcaagggatcgttaaaaaagttgtcgggcatataaatgat
cctggaatcgacattttaaccattgtatataaacacggtattccaactgaattctctcca
gaggctatacaacaagcagatgatgtgccggataaaatcaacgaatcggactttgaagga
cgtcgcgatttaagagatgaagttcttgtgacgatcgatggagaagacgcaaaagattta
gatgatgctgtaggcttgaaattattagataacggaaattatcaacttggtgttcatata
gcagatgtttcctactatgtaacagaagacagtcctttagacaaagatgcatttgaaaga
ggaaccagcgtatacttaaccgatcgagtgattccaatgattcctcaacgtttatctaat
ggaatctgttcgttaaaccctcatgtagaccgtctaacgatgagctgtgtgatggaaatg
acaccagatggagaaattgtcggacaagatattttccaaagtgtaatacgaacaacggaa
cggatgacgtatactgaagtaaacgaaatattaacggataagaatcctgaaatacgtaaa
aaatatagtaatttagtagacatgtttgagttaatggaaaatctgcaccatacacttgag
aaaaaacgtaaatctcgtggagcgattgattttgatacaaaagaagccaaaattattgtt
gaccctgaaggcaagccattagatattgtattaagagaacgtggtgttggagaacgcttg
attgaatcctttatgttggcagcgaatgaaacggtatctgaacatttctctaaaatggaa
gttccgttaatttaccgtatccatgaacaaccggatagtgatcgtatgcaaaaattcatg
gaatttgttacagcatttggaattaccgttaaaggaactagccaagatgtttctcctaag
acattacaaacagttgttaatagtgttaaaggtaagcctgaagaacaagttgtttcaaca
atgatgttaagaagcatgaaacaagctaaatatgatgtggaaccattaggtcactttgga
cttggagcagaatattattcgcactttacgtctccaattcgtcgttatccagacttaatc
ctgcatcgcttgattcgttcatatggtgaaaaaggaacaggttctgctcaaaaagcgaaa
tgggaaaatcggttaccagatattgctgagcaaacgtcaaaagcggaacgtcgcgcagtt
gatgctgaaagagaaacggatgcattgaagaaaactgaatttatggccgataaagttggc
gaaatctatgaaggaatcattggttctgtgttgaaatttggtttgtttgttgaattgccg
aatacagttgaaggcctggtccatatttcaaatatgaaagacgactactttaattatatc
gaggaacaaatgatgctcgttggagaacgtacaggggtcgtttaccgtattggacaaaaa
gtaaaagtaaaaataacaaaagcagatcctgaaacacgtgaaattgattttgagttggta
ccagatccaaatgcacctaaatatgatggaccgaaacgttcaacaaaaggcagaggtaga
ggaaatagtcaaactcgtggaaaagatagtggttcaaaagagaaattttcatcttacaaa
cctaagggaaaagaatcaagcaaaaagaaaagcaagcctttttataaagaggtagctaaa
aagaaaaaacctaagaaaaaataa
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