Carnobacterium viridans: LHA31_05605
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Entry
LHA31_05605 CDS
T08019
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cvd
Carnobacterium viridans
Pathway
cvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHA31_05605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvd03019
]
LHA31_05605
03009 Ribosome biogenesis [BR:
cvd03009
]
LHA31_05605
Enzymes [BR:
cvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHA31_05605
Messenger RNA biogenesis [BR:
cvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHA31_05605
Ribosome biogenesis [BR:
cvd03009
]
Prokaryotic type
rRNA helicases
LHA31_05605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Arginosuc_synth
Helicase_RecD
RAM
Motif
Other DBs
NCBI-ProteinID:
UDE96283
LinkDB
All DBs
Position
complement(1131606..1133189)
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AA seq
527 aa
AA seq
DB search
MLKFTELGLAPELLKSVERLGFEEATPIQSQTIPLALEGKDVIGQAQTGTGKTAAFGLPM
LQKIDVNNRNVQGLVIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALKDA
PHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQTLL
FSATMPPAIKRIGVRFMKDPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDVQTP
ELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDVLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVIENLTK
KAMTPLRPPTNAEAFEGQIKASIEEVGSIIDANGLDRYEKAAAQLLETYTAEDLAAAFLK
SVTKDADEVPVKITPERPLPGRKGGSHGGGSNRGGSASKGGYRGGSSRSGKPSERRGGGS
GTGGSGKWNKDSSRGGSDSRRKDSRGKSTDNRRKAGGERKFTIRDKD
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atattgaaatttacagaattaggtttagcacctgagttattaaaatcagtagaacgttta
ggatttgaggaagcaacaccaatccaatcacaaacgattccattggcacttgaaggaaaa
gacgttattgggcaagcacaaacaggaactggtaaaacagctgcatttggtttaccaatg
ttacaaaaaattgatgtaaataaccgtaatgtacaaggattagttattgcacctactcgt
gagttagctatccaaacacaagaagaattattccgtttgagtcgcgataaaaaaattcgt
gttcaagttgtttatggtggagctgacatcagtcgccaaattcgtgctttaaaagacgca
ccacacattgtggtaggtacaccgggtcgtttattagatcatatcaaacgtaaaacattg
aaattaggacatgttgaaacgttagtattggacgaagcggatgaaatgttgaacatggga
ttcattgatgacattgaaacaatcattcacgaagttccagctgaacgtcaaacattatta
ttctctgctacaatgccacctgctatcaaacgcattggtgtacgctttatgaaagaccct
gaacatgtacaaatcaaagcaacaacaatgtctgatagtttgattgaacaattcttcgta
cgttgtaaagacttcgaaaaatttgatattatgactcgtttatttgatgttcaaacacca
gaattaacgatcatttttggtcgtacaaaacgtcgcgtagacgaattagctcgtggatta
gaagctcgcggataccgtgcagaaggaatccatggtgacctttctcaacaaaaacgtatg
agtgttttgaaatcatttaaaactggtaagttagacgttttagtagcaactgacgtagct
gctcgtggattagatatttccggagtgacacacgtatacaactatgatattcctcaagat
ccagagagctatgttcaccgtattggacgtactggtcgtgctggaaaagagggtgtttct
gtaacattcattacacctaatgaaatgggatatttacgtgttattgaaaatttgactaaa
aaagctatgacaccattacgtccaccaacaaatgcagaggcttttgaaggacaaatcaaa
gcttcaattgaagaagtaggttctattattgacgctaatggtttagaccgttatgaaaaa
gctgctgcacaattattggaaacttatacagctgaagatcttgctgctgcattccttaag
agtgtgacaaaagacgctgacgaagtaccagttaaaatcactccagaacgtccattacct
ggccgtaaaggcggaagtcatggtggcggaagcaaccgtggtggaagtgcaagtaaaggt
ggataccgtggtggaagcagccgtagtggcaaaccttctgaacgtcgtggtggcggaagt
ggcactggcggaagcggaaaatggaataaagattcaagtcgtggtggaagtgacagccgt
cgtaaagatagccgtggcaaatctactgataaccgtcgtaaggctggcggagaacgtaaa
tttacgattcgcgataaagactaa
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