Carnobacterium viridans: LHA31_06125
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Entry
LHA31_06125 CDS
T08019
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cvd
Carnobacterium viridans
Pathway
cvd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LHA31_06125 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvd03400
]
LHA31_06125 (mfd)
Enzymes [BR:
cvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LHA31_06125 (mfd)
DNA repair and recombination proteins [BR:
cvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LHA31_06125 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
MFD_D3
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
UDE96290
LinkDB
All DBs
Position
complement(1233438..1236941)
Genome browser
AA seq
1167 aa
AA seq
DB search
MLADAPDVKALLDQLEQHQSQLITGLSGSARTLVLSTLVAEKKKPFIIVTHNLFHANQLM
EDFADWVPEDRLHLFPVDEMIYAEMSVASPEARAERVATLDFLLSEKFGVVIVPLAGVRK
LLPPKEIWQAAQFTIKQGGELDLTHLSQRLVDMGYTRQQLVNSPGEFSIRGGIVDIYSLT
EEFPIRIDLFDTEIDSLRYFDAATQRSIQTIEKATILPATDTVYTKEQLTAAAPKFSKAV
ERNLSLIQDASEKQTFIKQMTPISDAFQKGEPIDELTMFTDFIYPEKNSVLDYMSKKGIV
VMDEYPRIMDTDRRLSEEEAEWVISKLSERRILQNQVFSNNFRDQLKALNTSILYFAVFQ
KGMGNTRFNHIHAFQYRNMQQFFGQMPLLKTEMDRWIKQKNTIIIMVPNTDRAKKVHQTF
KDFEITSKIVKPARLELEKVQIVEGYVQSGFEMPTDKLVVITERELFNKVTKKTARRQTL
SNAERLKSYSELNPGDYVVHVNHGIGKYTGMETLEIDGIHQDYMSIIYKDDAKLFIPVTQ
LNLLQKYVSSEAKTPRVNKLGGTEWAKTKKKVATKIEDIADELIELYAAREQEVGYAFSP
DDAYQEEFENAFPYTETDDQLRSTAEIKHDMEQKKPMDRLLVGDVGYGKTEVAMRAIFKA
VQEGKQAAFLVPTTILAQQHYETMLQRFADFPIEIGLLSRFRTKKQQNETIAGLKKGQVD
IVVGTHRILSKDIEFQDIGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHM
SMLGVRDLSVIETPPANRYPVQTYVMEQNLGAIREAVEREMARGGQVFYLYNRVATIEKK
VDELQQLIPDARIGYAHGQMTEGQLENTLLQFIEGEYDMLVTTTIIETGVDMPNVNTLFV
ENADHMGLSQLYQLRGRVGRSNRVAYAYFLYQPNKVLNEVSEKRLQAIKDFTELGSGFKI
AMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVARKRGIDAKEEKTQVEIDLGIN
AYLPGTYIEDERQKIEIYKRIRELRSHEQYVELQDDLIDRFGEYADEVADLLTIGLIKMY
GERALIETIKRTDDEVELTFSIVGTQSLPAEEVFRSLSEVPLRANVAVKKDRLMVTLQLK
KEPTYQWLGYIEKFAQNIVSYRLKEAD
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atactagctgatgcgcctgatgttaaagctttgctagatcaactagagcaacatcaatca
caattgataacaggattatctggttcagcaagaacgttagtcctgagtacgttagtagca
gaaaagaaaaagccatttattattgtgacgcataatttatttcatgccaatcagttgatg
gaagattttgcagattgggtacctgaagaccgactacatctttttccggttgatgaaatg
atctatgcagaaatgtctgtagcttcacctgaggcaagagctgaacgagtagcaacatta
gattttttgttatctgaaaaatttggtgttgtgattgtacctcttgcgggtgtgcgtaaa
ttattgccgccaaaagaaatatggcaggccgcacaatttacaatcaaacaaggaggggaa
ctggatttaactcatttatctcagcgattagtagatatgggctatactcgccaacaatta
gtgaatagtcctggtgaatttagtattcgcggtggaattgtcgatatttattctttaacc
gaagaatttccaattcggattgacttgtttgatactgaaattgattcgttgcgttatttt
gatgctgctacacaacgttccattcaaacaattgaaaaagcaactattcttcccgcaaca
gataccgtttataccaaagaacaattaacggctgcagcacctaaatttagtaaagctgtc
gaaagaaatctgagcttaatacaagatgcttccgaaaaacaaacgtttatcaagcaaatg
acacctatttcagatgctttccaaaaaggtgaaccaattgatgaattaacgatgtttaca
gattttatttatcctgaaaaaaatagtgtattggattacatgagtaaaaaaggaattgtt
gtgatggatgagtatcctaggataatggatactgatcgtcggttaagtgaagaagaagcg
gaatgggtaattagtaaactgagtgagcgacgcattttgcaaaatcaagtcttttcaaat
aattttcgtgatcaattaaaagcattaaacacgagtatcttatactttgcagtttttcaa
aaaggaatgggaaatactcggtttaatcacattcatgcttttcaatatcggaatatgcag
cagttttttggtcaaatgccgttacttaaaacagagatggatcgttggataaaacaaaaa
aatacgattatcattatggtgccaaatactgatcgagctaaaaaagtacatcaaacgttc
aaagattttgaaattacgagtaaaatagtcaagcctgctaggcttgaacttgaaaaagtg
caaatcgttgaagggtatgttcagtcaggttttgagatgccgacagataaactggtagtc
attaccgaacgagagctattcaataaagtcactaagaaaactgctagacgccaaacacta
tccaatgcagaacggttgaaaagttacagcgaactgaatcctggggattacgttgtccat
gttaatcacgggattgggaaatatacgggaatggaaactcttgaaattgatggcattcat
caagattatatgtcgatcatttataaagatgatgcgaaattatttattcctgtaactcaa
cttaatttactgcaaaaatatgtttcttccgaagcgaaaacgccaagagttaataaatta
ggcggaacagaatgggctaaaacaaagaaaaaagtggcgactaaaattgaagacatcgcg
gatgaactcattgagctatacgctgcccgagaacaagaagtagggtatgcattttctcca
gatgatgcctatcaagaggaatttgagaatgcttttccgtatacagaaacagatgatcaa
ttgcgtagtactgctgagatcaaacatgatatggaacagaaaaaaccaatggatcgttta
ctcgttggtgatgttggatatggtaaaacagaagtagcaatgcgggcaatttttaaagct
gttcaagaaggaaaacaagcagcctttttagtgccaacaactattttagcgcaacagcac
tatgaaacgatgctgcaacgctttgctgattttccgattgagattggtttattgagtcgt
ttccgaacaaaaaaacagcagaatgaaacgatagcaggtctaaaaaaaggacaagttgat
attgtggtcggaacacaccgtattttatcaaaagatattgaatttcaagatatcggttta
ctgatagtagatgaagaacaacgatttggtgtgaagcataaagagaaattaaaacagtta
aaagcgcaagtggatgtcctaaccttaactgcaacacctattccacgaacgcttcatatg
tctatgctaggtgtaagagacttatctgttatcgaaactccacctgcaaatcgttatccg
gttcagacatatgtaatggaacaaaatctaggagcaatacgtgaagctgttgaacgagaa
atggcacgtggcggacaagtcttttatttatataatcgagtagccacgattgagaaaaaa
gtagatgaactacaacagttgattccagacgcgagaatcggctatgcccatgggcaaatg
acagaaggacaacttgagaacacgttgctgcaatttattgaaggggaatacgacatgtta
gtcaccactacgatcattgagactggtgtcgatatgcccaatgtaaatacgttgtttgta
gagaatgcagatcatatgggattatcacaattgtaccaattgcgcggtcgcgtaggtaga
agtaatcgtgttgcatatgcctacttcttgtatcagccaaataaagtgctaaatgaagtc
agcgaaaaaagattacaagcgattaaagattttactgaactaggctcaggatttaaaatc
gccatgcgtgacttatcgattcgtggtgctggaaacctattgggagcacagcaacatggg
tttattgattcagttggatttgatttgtattcagagatgttaagtgaagcagtagctcgt
aaacgagggatagacgcgaaagaagaaaaaacgcaagttgaaattgatttaggaatcaac
gcttatctaccaggtacgtatatagaagatgaacgtcaaaaaattgaaatttacaaacgt
atccgagaattgagatcacacgaacaatatgtagaactacaggatgatttaattgatcgt
tttggggagtacgcagatgaagtagcagacttgttaacgattggattaatcaaaatgtac
ggtgaacgtgcactgatagaaacaatcaaacgaacagacgatgaagtcgagttaacattt
tctattgtaggtactcagtcgttgcctgcagaagaagtgtttagatcgttaagtgaagtg
cctttaagagcaaatgtagctgtcaagaaagaccgtttgatggttacgctacaactgaaa
aaagaaccaacctaccaatggttgggatatattgaaaagtttgcccaaaatatcgttagc
tatcgtttaaaagaggctgactaa
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integrated database retrieval system
