Carnobacterium viridans: LHA31_11090
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Entry
LHA31_11090 CDS
T08019
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cvd
Carnobacterium viridans
Pathway
cvd03420
Nucleotide excision repair
cvd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LHA31_11090 (pcrA)
03430 Mismatch repair
LHA31_11090 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvd03400
]
LHA31_11090 (pcrA)
Enzymes [BR:
cvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LHA31_11090 (pcrA)
DNA repair and recombination proteins [BR:
cvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LHA31_11090 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
LHA31_11090 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_11
AAA_30
Terminase_6N
DUF6175
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
UDE95079
LinkDB
All DBs
Position
2221275..2223521
Genome browser
AA seq
748 aa
AA seq
DB search
MVSRDDLLSGMNPKQKDAVVCTKGPLLIMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILA
ITFTNKAAKEMKERVARLLKEGGNDVWVSTFHSMCVRILRRDIDRIGYTRAFTISDPGEQ
QTLMKRILKERNIDPKKYNPRAILGEISNAKNELQTPEDYRKTAASFFEKIVADCYDDYQ
RELRRNQSVDFDDLIMLTIRLFKESSETLEHYQNKFHYIHVDEYQDTNEAQYTLVNMLAD
RFKNLCVVGDADQSIYGWRGANMENILNFEKDYPDANTVLLEQNYRSTKLILQAANDVIG
NNSKRKVKKLWTDNHDGEKITYYRGQSEGDESRYVISKIQEEMKENNYNYGDFAVLYRTN
AQSRVIEDSLLKSNIPYKMVGGHKFYDRKEIKDVLAYLRLIANPDDNMSFERIVNVPKRG
IGPGTIEKLRDTSNQYDWSLLETALNVSITPITGKAANELEGFGFMMKDLRQMQEYVPVT
ELVEEVLKRSGYQKALELERTLESETRLENIQEFLTVTQQFEKENTEDKTLLTFLTDLAL
VSDLDNLEEEPQSEVTLMTLHAAKGLEFPIVFLIGLEEGIFPLSRSMMEEDQLEEERRLA
YVGITRAEKKLYITNAYSRVLYGRTQSNSASRFINEITDEVLELGNQQTLNTPFSRSTAS
SMQRNQATRATSQVYKAPVASKTSSGADKLAWNVGDKAVHKKWGVGTVVKVTGAANDLQL
DIAFKEQGIKRLLAAFAPIEKQGAENDA
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
ttggtatcaagagatgacttattaagtgggatgaatcccaagcaaaaagatgcagttgta
tgcacaaaaggacctcttttaattatggccggagcaggaagcggaaaaacacgtgtctta
acacaccgtattgcctatctgattgaagaaaagaatgttaacccatggaatattttagcg
attacatttacaaataaagcggctaaggaaatgaaagaacgagtagcacgtcttttaaaa
gaaggcggaaacgatgtctgggtctctactttccactcgatgtgtgtccgtattttacgt
cgtgacattgatcgtataggctatacgcgtgcatttacaatcagtgatccaggtgaacaa
caaaccttaatgaaacgaattttaaaagaacggaatatcgatcctaaaaaatacaatcct
agagcaatcttaggcgaaatcagtaacgctaaaaatgagttgcagacacccgaagattac
cgtaaaacggcagcaagtttttttgagaagattgttgcagattgctacgatgattaccaa
agagaactacgtcgcaaccaatcagtggattttgatgatttgatcatgttgactatccgc
ctattcaaagaaagctctgaaacattagagcactatcaaaataaatttcattacattcat
gtggatgagtaccaagatacaaatgaagcacagtatactttagtaaatatgttggcagat
cgatttaaaaacctatgtgttgttggagatgctgaccaaagtatctatggatggcgcgga
gcaaatatggaaaatatcttgaactttgaaaaagattatccagacgcaaatactgtttta
ctagaacaaaattaccgctcaactaagttgattttacaagcggccaatgacgtgatcgga
aataattcaaaacgtaaagttaaaaaactttggacggataaccacgatggcgaaaaaatt
acgtattaccgtgggcaatctgaaggggacgaatcacgttacgttatttctaagatacaa
gaagaaatgaaagaaaacaattacaattatggtgattttgcagttctttaccgtaccaat
gctcaatcgcgtgttattgaggacagcttgttaaaatcgaatattccttataaaatggtc
ggaggacacaagttctacgatcgtaaagaaatcaaagacgttctggcttatcttcgcttg
attgccaatcccgatgacaacatgagttttgaacggatcgttaatgtgcctaagcgaggt
attggcccaggaacgatagaaaagttgagagatacttccaatcaatatgactggtctctt
ttggaaacagctttaaatgtttctattacaccgataactggaaaagcggctaatgaactt
gaaggatttggattcatgatgaaagatctgcgccaaatgcaagaatatgtacctgttacg
gaattagtggaagaagtattaaaacgtagtggttaccaaaaggcactagaattagaacgg
acacttgaatctgaaacgcgcttagaaaatattcaagagttcttgaccgtaacccaacaa
tttgaaaaagaaaatacggaagacaaaacattgctgacattcttaacagatttggcattg
gtttctgatttggataatttggaagaagaacctcaaagcgaagtaactttaatgacgctt
catgcagcaaaaggattagaatttccaatcgttttcttgattggtctggaagaaggcatc
ttcccgttgtctcgttcaatgatggaagaagaccaactagaagaagaacgtcgcctggct
tatgttgggataacacgagcagaaaaaaaactatacattacaaatgcttattcacgagtt
ttatatggccgtacacaaagcaattcagcttctcgctttatcaatgaaatcacggatgaa
gtcttagaattaggaaatcaacagactctaaatacaccatttagccgttccacagccagt
tctatgcaacgcaatcaagcgactcgagctactagtcaagtatacaaagcaccagtagcc
agcaaaacgtcaagcggagctgataaattagcatggaatgttggagataaagctgttcat
aaaaaatggggtgtcggtacagtagtcaaagttaccggcgcagccaatgacctccaactc
gatatagcctttaaagaacaaggcatcaaacgcctcctagcagcatttgcaccaatagaa
aaacaaggtgcggaaaacgacgcttag
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