Carnobacterium viridans: LHA31_11135
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Entry
LHA31_11135 CDS
T08019
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cvd
Carnobacterium viridans
Brite
KEGG Orthology (KO) [BR:
cvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvd03009
]
LHA31_11135 (rlmD)
Enzymes [BR:
cvd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LHA31_11135 (rlmD)
Ribosome biogenesis [BR:
cvd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LHA31_11135 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
RrnaAD
Methyltransf_25
TRM5-TYW2_MTfase
PrmA
MTS
DOT1
TRM
Methyltransf_11
Methyltransf_32
PCMT
Methyltransf_4
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
UDE95087
LinkDB
All DBs
Position
2233599..2234975
Genome browser
AA seq
458 aa
AA seq
DB search
MKADKIVPVKKNEKHTVKIEDLTHEGMGVARIQGYSLFIENALPGEQVEVKIHKTGKSFG
YAKVLNRLNSSEDRVVIQDENYTRVGITPLQHMRYPAQLNFKKQQVKNSMQRIAKLPEVP
VYDTIGMANPSGYRNKAQIPVRKINDKLTTGFFRKNSHEVIPMENFYIQDPKIDETIIAV
RDIMREYGVKPYNEHENTGNLRHIIVRRGYYTGEIMIVLVTRTAKLFPTSKIIPDILEAI
PEVVSIVQNVNPKHTNVILGDDAIVLYGEDKFRDTLLGNTFEISHRSFYQVNPLQTEKLY
QTVLDFAELTGEETVIDAYSGIGTITLTLAKNAKHVYGIEVIEPAVENAKANAELNNIDN
VTFEAGAAEEVMVKWSEEGRTADLLVVDPPRKGLEKEFTEAVLEMKPTKMIYVSCNPATL
ARDLALLSEGGYTVKKVQPVDLFPQTTHVESVTLLVRD
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcagataaaatagtaccagttaagaaaaatgaaaaacacaccgttaaaattgaa
gatttaacacatgagggtatgggagtagcaagaatacaaggctattcactatttattgaa
aatgctttacccggtgaacaagtagaagttaagattcataaaacagggaaatcttttggt
tatgcaaaagtattgaaccgtttaaactcaagtgaagaccgtgtagtcatccaagatgaa
aattatacacgtgtaggcattacgccgttgcaacacatgagatacccagcacaattaaac
tttaaaaaacaacaagttaagaacagcatgcaacgcatcgcaaaattaccagaagtaccc
gtatacgacacgattggaatggctaatccatcaggttaccgtaacaaagcgcagataccg
gtacgtaaaatcaatgacaaattaacgactggttttttccgtaaaaacagtcatgaagtg
attccaatggaaaacttctacattcaagatcctaaaattgatgaaacgatcatcgcagtt
cgcgatatcatgcgtgaatatggggttaaaccttataacgaacatgaaaatacgggtaat
ctgcgtcatatcattgttcgtcgtggatactatactggtgaaatcatgattgtattagta
acaagaacagctaaattgttccctacaagcaaaatcattccagatattctagaagcaatt
ccagaagttgtcagtattgttcaaaatgttaaccctaaacacacgaatgtgattttaggc
gacgatgcaattgttttatatggcgaagataaatttagagatactttattaggcaacaca
tttgaaatttctcaccgttcattctaccaagtgaacccacttcaaactgaaaaattgtat
caaactgttttagactttgctgaattaacgggagaagaaaccgttattgatgcctacagt
ggaattgggaccattacattaacattagctaaaaatgctaaacatgtttatggaatcgaa
gtaattgaaccagctgtagaaaatgcaaaagcaaatgctgaattaaacaatattgataat
gtgacctttgaagcaggtgctgctgaagaagttatggttaaatggagtgaagaaggccgt
acagctgatttattagttgttgaccctcctcgtaaaggtcttgaaaaagaatttactgag
gctgttcttgaaatgaaaccaacaaaaatgatttacgtaagttgtaatccagcaacattg
gcacgtgacttagctttactttcagaaggcggatatacagttaaaaaagttcaacctgta
gatttattccctcaaacaacacacgtggaaagtgttactttactcgttcgtgactaa
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