Cebidichthys violaceus (monkeyface prickleback): 137866340
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Entry
137866340 CDS
T10484
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137866340 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cve03019
]
137866340 (smg5)
03032 DNA replication proteins [BR:
cve03032
]
137866340 (smg5)
Messenger RNA biogenesis [BR:
cve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137866340 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
137866340 (smg5)
DNA replication proteins [BR:
cve03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
137866340 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
137866340
NCBI-ProteinID:
XP_068558263
LinkDB
All DBs
Position
Unknown
AA seq
1129 aa
AA seq
DB search
MSGPVQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKASYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHMGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDA
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRLKDIKHLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPPPPPHGGAHHPPSEEEEEQQHADSSCPVLPDTLVF
KMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAESQVPPLHTD
ATDDPEVRDLSAPATDRPVEKPLQNGSVEQEDEEEEEEEEKDEEGRERVGAKKQCSAEEQ
RQTEEEKQRQKKKYTRLSRLRRRRCARKDTRGEDESDLSEGFESEEDEEDVDERRGNADS
TGATTAGTPVNPPAPRKETKREPLGEEGSWGSGSEEEEEEGGTAFDVETDSDMNSQESRS
DLEDIEDTETSDNLEGQAREQQDEEEDEEQPKEEGGERDGDTPPTTNGPLVPSDSSISTN
LQAMSSQLFQAKRCFRLAPTFSNMLLRPPASSSSSGIPTPTEASAPPSQETPPPPGDSPC
DINPGAANGTNDNDLDSDSEGSQHSTQSVHSEKTLLEKLEILTNQGLIQVVKVFVDWLRT
NTDIILMCAQSSQSLWNRLSVLLNLLPDGSKMLEAELGLNAAVTELLNECEQPGLVQSLL
LPEDLALRHLPALNVAHRRLDFTRRNPSLSSLQECVVRVCCIRSFGHFLTNLQGNVLHFN
PEAGIFTSISQSEQDNLVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQP
KAQSSMSPYLVPDTAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENAGARDGIR
FLESEFRKGNRYIRCQKESGRSFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTA
GMVTILTDQQVEELCTRSAAMKSAIQAAGSAGMELKNIVDFYRQWKEIG
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccggtgcaggacagcgagccagaggcgaaagtccttctcatcaagcggctt
tacagggccgtggtggagtctgtgcacaagctggatgtcatcatcggcagcaaagcatcc
tacagagaggtcttcaagccggagaacatcagccttcgcaacaagctgagggagctttgt
gtgaagctgatgtttctccacccggtggactacggccgtaaggctgaggagctgctctgg
aggaaggtttactatgaggtcatccaggttatcaagaccaacaagaagcacatccacagt
cgcagcgctctggagtgcgcctaccgcacgcacctgatcgccggcgtgggtttctaccag
cacctgctgctgtacatccagtcccattaccagctggagctgcaggactgcatcgactgg
acccacgtcacagacccgctgataggccgaaagaaaccggtgtcggccacccccaaggag
atggagtgggcacagatggcctgtcatcgctgtctggtctaccttggagatctagcccgt
tatcagaacgaacttgctggagtggaggcggagcagctggcagaacggttctatcaccag
gcgctgtccgtcatgccacacatggggatgccgtttaaccagctgggcacactggcaggg
agcaagttctacaatgttgaagcaacctactactaccttcgctgcatccaatcggacgcc
ccctttgaaggcgcctatggcaacctgaagcgcctgtttgacaaagctgccaagatgtac
caccaggtgaagaagcaggaaatgaagaagctgtctccttctcgacaaagattaaaagac
attaagcacctcctggtgagcttcatgtaccttcagagcctgctgcagcccaagaacagt
ctgatggagacggagctgacgtcactttgccagtcggtgctggaggacttcaacctggtg
ctgttctacctgccgccgccgccgccgcatggcggtgctcaccacccccccagcgaggaa
gaggaggagcagcagcacgctgacagctcctgccccgtgctgcccgacaccctcgtcttc
aagatggtggtcacgtgtctgatggtggtgcacagcctgaagaggggaggatcgaagcag
tacagtgcgtccatagctttcactctggcgctgttctcccatctggtgaaccacgtcaac
atccgtctgcaggctgaactggaggaagcggagagccaggtgcctccgcttcacaccgac
gccacagacgacccggaggtgagggacttatctgctccggcgacagatcgccccgtcgag
aagcctctgcagaacggctccgtggagcaagaagacgaggaggaggaggaggaggaggag
aaggacgaggaaggccgggaaagggttggcgccaaaaagcagtgcagtgcggaagaacag
cgccagacggaggaagagaaacagaggcagaagaagaagtacacccgtctctcgagactc
cgccggcgccgctgcgcgcgcaaggacactcgaggagaggacgagagcgacctgagcgaa
ggcttcgagagcgaagaggacgaggaggacgttgacgagaggcggggcaacgctgactca
acgggtgccaccactgcggggaccccggtcaatccgccggctcccaggaaggagacgaag
agggaacccctgggcgaggagggcagctgggggagcggctcggaggaagaggaggaggaa
ggaggcacggcgttcgacgtggagaccgactcggacatgaacagccaggagtctcgctcg
gacctggaggacatcgaggacacggaaacctcggacaacttggagggtcaggcgcgggag
cagcaagacgaagaggaagatgaggagcaacccaaggaagaaggaggcgagagggacggc
gatacaccgcccaccaccaacgggccgctcgtgcccagcgactccagcatcagcaccaac
ctccaggccatgtcctcgcagctcttccaggcaaagcgctgcttccgcctggcgcccacc
ttcagcaacatgttgctgaggcctccagcctcgtcttcttcttcgggtattcccacccct
accgaggcctctgcccccccctcccaagagacaccccctcctcctggggattcaccctgc
gatatcaaccccggtgctgccaacggaaccaatgacaatgacttggactccgattcggaa
ggcagccaacacagtactcaatcagtacacagtgagaaaaccctcttagagaagctggag
atcctgaccaatcagggcttgatccaggtggtgaaagtctttgttgattggctgaggaca
aacaccgacatcatcctcatgtgtgcacagagttctcaaagcctgtggaaccgactgtct
gtgttgctcaacctgctaccagatggcagcaagatgctcgaggctgagctcggtctgaac
gccgcggtgacggagctgttaaacgagtgcgagcagcccggtttggtccagagtctgctg
ctgcctgaagatttggctctgcgacacctgccggctctcaacgtagctcaccggcgcctc
gatttcactcgccgcaacccgtccctcagctccctgcaggagtgtgtcgtgcgagtgtgt
tgcattcgcagttttggccacttcctgacgaatctccagggcaacgtgctgcacttcaac
ccggaggcgggcatcttcaccagcatcagccaatctgagcaggacaatctggtgcagcag
gccaaggcccagttccgaatggctgaagaggaggctcgtcgaaatcgcctaatgagggat
atggcccagcttcgactgcagttggaggtgtcgcagctagagggcagccttcagcagccg
aaggcccagtcctccatgtctccctacctggtgccagacacagccgctctctgccagcac
ctcaacctcatccggcagctggccggcagcggctgcttcatcatcatcatcccgcggaca
gtgatcgatggactcgacaggctgaagaaggaaaacgccggagcgagggatggcatccgc
ttcctggagtctgaatttcgcaaaggcaacaggtacattcgctgccagaaggagtctggt
cgaagttttgaaagggataaactgaagcgtcaggacatcgaagcctggcatttatacaag
atggtggacagctgtcgtcagctgaccgtctcccagagcaatggagatgaagatacagcc
ggcatggtgaccattctgactgaccagcaggtggaggagctttgcactcggtcagcggca
atgaagtcggcgatccaggcggcgggctctgcgggcatggagctgaagaacatcgtggat
ttctaccggcagtggaaggagattggctga
DBGET
integrated database retrieval system
