Cebidichthys violaceus (monkeyface prickleback): 137866595
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Entry
137866595 CDS
T10484
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03013
Nucleocytoplasmic transport
cve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137866595
03015 mRNA surveillance pathway
137866595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cve03019
]
137866595
Enzymes [BR:
cve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137866595
5.6.2.5 RNA 5'-3' helicase
137866595
Messenger RNA biogenesis [BR:
cve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137866595
mRNA cycle factors
Common to processing body (P body) and stress granule
137866595
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Ribosomal_S13_N
Motif
Other DBs
NCBI-GeneID:
137866595
NCBI-ProteinID:
XP_068558706
LinkDB
All DBs
Position
Unknown
AA seq
1123 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQTQGQTQSQLDHQV
NGPDGILQNGDDPVIKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFSLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGH
VIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICSTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPSQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSNMYFQTHDQIGMIGTGPGPMTSL
NIPIPFNLVMPPIPPPGYMGQANGPSAGRGGGMKGKAGSGGGGGGGGGGGGGTRGGRQRN
RGNMGNHSGGNGGADRHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQ
PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgatttcaccctg
ccgagccagacccagacccagacccaaggccagacccagagccagctggaccaccaggtt
aacggccctgacggaatactacagaacggcgacgaccccgtcatcaaagccagtcagctg
ctcgcggagttgaactttgaggaggatgaggaggacacctactacaccaaggatctgcct
ctacatgcctgcagttactgtggtattcatgatccagcctgtgtggtctactgcaacacc
agcaagaaatggttttgtaatggccgtggaaacacatccggcagccacattgtaaaccac
ctggtgagagcgaagtccaaggaggtgaccttgcacaaggacggccctctgggggaaacg
gtgctggagtgctacaactgcggctgtcgcaacgtcttcctcctgggcttcatccccgcc
aaagccgactctgtagtggtgctactgtgcaggcagccatgcgccagccagagcagcctg
aaggacatcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctg
tcctggctggtgaagatcccctcggagcaggagcagctcagggctcgtcagatcaccgcc
cagcagatcaacaagctggaagagctgtggaaggaaaatcccaccgcgaccctggaggac
ctggagaagcccggtgtcgacgaggagccccaacatgtgctgctccgctacgaggacgcc
taccagtaccagaacatctttggtcctcttgtgaagctggaggccgactacgataagaag
ctcaaagagtctcagactcaagacaacatcactgtcagatgggacttgggcctgaacaaa
aagaggattgcttatttcagtctccccaagaccgactcagacatgcgtctgatgcaggga
gatgaaatttgcctgaggtacaaaggagacctggctcctccatggaaaggcattggacac
gtcatcaaagtccctgataactatggcgatgagattgccatagagctgaggagcagcgcc
ggcgctccagtggagatcccgcacaactttcaggttgactttgtgtggaagtccacttcc
tttgacaggatgcagagtgccctgaagacgtttgccgtggatgaaacttcagtgtcgggt
tacatttaccacaagctgctgggtcacgaggtcgaggacgtggtcatcaagtgtcagctg
cccaaacgcttcaccgcccaaggcctgcctgacctgaaccactcgcaggtgtacgctgtg
aagacggtgctgcagcgtcctctcagtctgatccagggtcctcctggcacggggaagacg
gtgacctcagcgaccgtcgtctaccacctggccagacagggcaacgggccagtgctggtg
tgcgctcccagtaacatcgccgtcgaccagctgacggagaagatccatcagacgggcctg
aaggttgtgaggctgtgcgccaagagcagggaggctatcgactcgcccgtgtccttcctg
gctctgcacaaccagacccgtaacatggacagcatgccagaacttcagaagctccaacag
ctgaaggacgagaccggagagctgtcctcctcggacgagaagcgctacagagctctgaga
cgcaccgctgagagggagctgcttatgaacgccgatgtgatctgctctacctgcgtcggg
gccggggatccccgtctggccaagatgcagttccgctcaatcctgattgatgagagcact
caggccactgaacccgagtgcatggtgcctgtcgtcctgggggccaaacagttgattctg
gtgggtgatcactgccagctgggccccgtggtgatgtgtaagaaggcagcaaaagcaggt
ctgtcccagtctctgtttgagcgtctggtagttttggggatccggccgatccgtctgcag
gtccagtaccgcatgcatccggccctcagcgccttcccctccaacatcttctatgagggc
tctctgcagaacggagtcactgccgcggaccgtgtgaagaaaggctttgacttccagtgg
ccgcagcctgacaagcccatgttcttttatgtcacccaaggccaagaggaaatcgccagc
tctggaacatcctatctcaacaggactgaggcagccaatgtggagaaaataaccacaagg
ttgctgaaagctggagccaaacccagtcagattggcatcatcacaccttatgagggacag
aggtcctacctggtccagtacatgcagttcagcggctccctccataccaaactctaccag
gaggtggaaatagccagcgtggacgcctttcaaggcagagagaaggacttcatcattctg
tcctgcgtgagagccaatgagcaccagggcatcggcttcctcaatgatcccagacggctc
aacgtggcgctcaccagggccaggtatggtgtgattatcgtgggaaaccccaaagccctg
tccaagcagcctctgtggaaccacctgttgaactactacaaggagcagaaggtcctggtt
gaagggccccttaacaatctgagggagagcctcatgcagttcagcaagccccgcaagctt
gtcaacaccatcaaccctggcggtcgattcatgagcacagccatgtatgatgccagggaa
gccctcattcctggatctgtttatgaccgcagcagtaacggacgctcgtccaacatgtat
ttccagacccacgaccagattggcatgatcggcacaggccccggtcccatgacgtctctg
aacatccccatccccttcaaccttgtgatgccccccatacctccacctgggtacatggga
caggccaatgggccctcagcaggtcgcggtggaggaatgaaaggcaaggcaggcagcgga
ggaggaggaggaggaggtggaggaggaggaggcgggactcgaggtgggcgtcaaagaaac
cgcggcaacatgggaaaccacagtggaggaaatggaggagcggaccggcatggtggccac
atgagtggcagccaggccagccaggatctgggctcccagcccttctcccagggacctctg
actcagggctacatcaacatgagccagccgtctcagatgagccagcctggactctcccag
cctgagctctcacaggacagttacctaggagacgagttcaagtcgcagattgacgtggct
ttgtcccaggactccacctaccagggggagcgggcctaccaacacggtgtgactggactg
tcccagtactag
DBGET
integrated database retrieval system
