Cebidichthys violaceus (monkeyface prickleback): 137866766
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Entry
137866766 CDS
T10484
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137866766 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cve03041
]
137866766 (snrnp200)
Enzymes [BR:
cve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137866766 (snrnp200)
Spliceosome [BR:
cve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137866766 (snrnp200)
Complex C
U5 SnRNP specific factors
137866766 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
Motif
Other DBs
NCBI-GeneID:
137866766
NCBI-ProteinID:
XP_068558971
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPNGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAGVGCAL
SANLGATGDVMTAKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDLEAMDIDHGESMASRQLLDLDDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVAIEKLPKYAQAGFEGFKTLN
RIQSKLYKTALETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVCKLPDMLN
AEIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLVHTAAN
VLDKNSLVKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTHTRLLSMAKPVYHAIMRHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKINDSTLKETLANGVGYLHE
GLSATERRIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDAILRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESI
FDIMEMEDEDRTALLQLSDTQMADVARFSNRYPNIELSYEVAEKDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVH
NYTLYFMSDAYMGCDQEYKFSADVKEADSEGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcccgtagcttgcagtacgagtacaaagcgaactctaacttggtg
ttacaagccgatcgctctctgatcgaccgcacacggagagatgaacccaacggagaggtg
ctgtccctggtggggaagctggaggggaccaagatgggcgacaaggctcagaggaccaaa
ccccagaagctggaggagagacgagacaagaggcgaaaaagagatgaggacagacacgac
atcaacaaaatgaagggttttactcttctgtctgaaggcattgatgaaatggtgggcatc
gtgtacaagcccaaaaccaaagaaaccagagagacctatgaagtgttgctgagcttcatc
catgctgctctgggagatcagccgcgtgatattctgtgtggagcggcggatgaggtatta
gcggtgttgaagaatgataaaatgagggacaaggaaaggcggcgtgaagtagagcagctt
cttgggcctgctgatgacacccgctaccatgtgttggtaaatttgggcaagaagatctct
gactacggaggcgacaaagacttacagaacatggatgacaacatcgatgaaacatatggt
gtgaatgtccagtttgaatctgatgaggaggagggagatgaagaccagtttggagaagta
cgagacgaacactcagatgaagacagcgaaggagaggaggcgggtgtgggctgcgctctt
tcagccaaccttggtgccacgggtgacgtgatgacggcaaagaaaaaagatctacatcct
cgagacatcgatgccttctggctccagcgtcagctcagccgcttctacgatgatgccatt
gtctcccaaaagaaagcggatgaagtgttggaaatcctcaagactgccagcgacgataga
gaatgtgagaaccagctggtgttgctgctgggctttaacacctttgatttcatcaaaatc
ctccgtcagcatcgtcgcatgattcagtattgtaccatgctggcaagtgctcagagtgag
gcagaaaaggagcggatcattggaaagatggagtctgatcaggaactgtcgaagattctt
taccagctgcaagagacggagaaggaggatattattcgggaggagcgatctcgcagggag
agggtgaggaagtctcgtgttgatgacttggaagcgatggacattgaccatggagagtca
atggcctctcgacagttgctagaccttgatgacctggccttcacccaggggagccatttc
atggccaacaagcgttgccaactgccagacggctcatttcgtaaacagcgcaaaggttat
gaggaagtccacgtgcccgccctcaaacccaagccctttgctgatgatgaggtgcttgtt
gccattgagaagttgcctaagtatgctcaggctggatttgaaggtttcaaaaccctgaac
cgcatccagagcaaactgtacaagaccgccttggagacagatgagaacctgctagtgtgt
gcacctacgggagctggtaagaccaatgttgctttgatggcaatgctgagagaaattgga
aagcacataaacctggatggaaccatcaatgtggatgacttcaaaatcatctacattgca
cccatgcgctcactagtacaggagatggtgggaagtttcagtaagcgcttggcaagttac
ggtatcacagtgtctgagctgacaggagaccaccagctctgcaaagaggagattaacgcc
actcaaatcatcgtctgcacacctgagaaatgggacatcatcacccgtaagggtggagag
cgtacctacacccagctagtgcggctcataatcatcgatgaaatccacctgctgcacgat
gaccgtggacccgtgttggaatctctggtggcaagaaccatccgcaatgtggagctgacc
caggaggatgtgcgcctgctgggtctcagtgccacgctgcccaactatgaagatgtggct
acctgcctgcgtgtagatcctgccaagggactcttctactttgacaacagtttccgccct
gtgccccttgagcagacttatgttggcatcacagagaagaaggccatcaagcgtttccag
atcatgaatgagattgtctatgagaagatcatggagcatgctggaaagaaccaggtgctg
gtatttgtccactcccggaaggagacgggaaagacagccagggccataagagacatgtgt
ttggagaaggacacactgggtcttttcctcagagaaggttcagcatccactgaagtgttg
agaactgaggctgagcagtgcaagaacctcgaactgaaggatttgctgccctatggcttc
gctatccaccacgctggtatgaccagagttgatcgtacactggtggaggatctgtttgct
gatcgacacatccaggtcctggtgtccaccgctactctggcttggggtgtcaacctgccc
gctcacactgtcatcatcaaaggcactcaggtgtacagcccagagaaaggcagatggact
gagctcggagccctggacattttgcagatgcttggtcgagccggccgtccccagtacgac
accaagggagagggaatccttattacgtcccatggagagctgcagtactatctgtccctg
ctcaaccagcagctgcccatagagagtcagatggtgtgcaagctgcctgacatgctcaat
gctgagatagtactgggcaatgtacagactgttaaggacgctgtgaactggctcggttac
acctacctgtatgtgcgcatgctgcgtaaccccaccctgtatggtgtctcccacgatgac
cggagttcagatcccctgctggagagacgcaggatggatctggtgcacacagcagccaat
gtcctggacaagaacagtcttgttaaatatgacaagaggacaggcagcttccaggttaca
gacctcggacgcattgccagtcacttctacatcactcatgactccattcagacttacaac
cagctgctgaagcccactctcagtgagattgagctcttcagagtcttttcactttcctca
gagttcaggaacatcactgtgagagaggaggagaagttggaacttcagaagctgctggaa
agagttcccattcctgtcaaggaaagcattgaggagcccagtgctaagatcaacgtgctg
ctccaggcgtacatctctcaactcaaactggaaggctttgccctcatggccgacatggtg
tatgtaacacagagtgctggaaggttaatgcgggccatatttgagattgttctcaacaga
ggctgggctcaactgacagacaagaccatgaatctttgcaagatgattgacaagagaatg
tggcagtcgatgtctccactgcgacagttcaagaagctgccagaggaagtgatcaagaag
atagagaagaagaacttccccttcgagcgtctctatgacctcaaccacaatgagattggt
gagctgatccgaatgccaaaaatggggaagaccatccacaaatacgtccaccagttcccc
aaactggacctggctgtccatctgcagcccatcacccgctctacactgaaagtggagctc
accatcacgcctgacttccagtgggatgacaagattcatggatcttctgaggctttctgg
atcctggttgaggatgtggacagcgaggtcatcctccaccacgagtacttcctgctcaaa
gccaagtacgcccaggacgaacacctcgtgactttctttgtcccggtcttcgagcctctg
cctccacagtacttcatccgcgtggtctcagaccgatggctctcctgtgagactcagctc
ccagtgtccttccgtcatctgatcctaccagagaaataccccccacctactgagctgctg
gacctgcagccgctgcctgtcactgctctcaggaactctgcctttgaggctctctaccaa
aacaaattccccttcttcaaccccattcagacacaagtgttcaacgctgtgtacaacagt
gatgataacgtgtttgttggagctcccactggcagtggaaagactatctgtgccgagttt
gctattctgaggatgctgctgcacaacgcagaaggtcgctgcgtctacatcaccccaatg
gaagcattggccgaacaggtgtttgtcgactggcaccagaagttccaggacatcctgaac
aaaaaggtggtactgctgacgggagagactagcacagatctgaaacttctgggaaaaggt
gacattattgtcagtacccctgacaaatgggacatcctgtctcgccgctggaaacagagg
aagaacgtccagaacgtcagccttttcattgtggatgaggcacacctcatcggaggagaa
aatggacctgtgttggaggtcatctgctccaggatgaggtacatctcctctcagattgag
cgccccatccgtatcgtggccctcagctcatctttgtccaacgccaaagatgtggcccac
tggctgggctgcagcaccacagccacattcaacttccaccccaacgtcagacctgtgccc
ctggagctgcacatccagggcttcaatgtgagccacactcatactcgcctgctgtccatg
gctaagccagtgtaccacgccatcatgaggcactctccctccaagccagccgtggtgttc
gtcccatcccgaagacagactcgtctcacagccatcgacatcctcactttctgtgctgct
gacgtggttcctcagaggttcttgcattgcactgaaaaagacctggctccattcctggag
aaaataaatgactcgactcttaaagagactctggccaacggcgtgggctacctgcacgag
ggcctgtctgcaaccgaacgcagaatagtggagcagctcttcaactcaggtgctgttcag
gtggtagtgtcctctcgttcactctgctggggcatcaacatctccgcacacctcgtcatt
gtcatggacacccagtactacaatggcaaaatccatgcttatgtggactatcctatatac
gacgtcctccagatggtgggcaaggcgaacagaccaatgctggatgatgagggacgctgt
gttatcatgtgtcagggctctaagaaggacttcttcaagaagttcctgtatgagccactg
ccggtggagtctcatttggaccactgcctccatgaccacttcaatgccgagattgtaacc
aagactgtggagaacaagcaggatgctgtggactacctgacttggacattcctctaccgc
cgtatgacccagaaccccaactactacaacctgcaaggcatgtcccatcgtcacctgtca
gaccacctgtctgagctggtggaacacactttacatgacctggagcagtcaaagtgcatc
agcatagaggatgagatggacgtagcaccgctcaatttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtccctgaatgccaagacaaagatc
cgtggattaattgagatcatctccaatgctgccgaatacaagaacattcccattagacat
catgaggacgcaattctccgacagttggcacagaaagtgccccacaaactgaacaacccg
aagttcaacgatccccacgtgaagacaaacctgctgctgcaagcccacctctccaggatg
cagctgagcgctgagctgcagtcggacacagaggatatcctgagcaaggcggttcgtctg
atccaggcctgtgttgatgtgctgtccagtaacggctggctgagtcctgcactggctgct
atggagctggcccagatggtcactcaggccatgtggtccaaggactcctacctcaaacag
ctgcccttcttcacctcagagcacatcaagcgctgtacagataagggggtggagagtatc
tttgacatcatggagatggaggatgaagacagaactgctttgctgcagctttcagacacc
cagatggccgacgtggctcgcttctctaaccgctaccccaacatagagctttcctatgaa
gtagcagaaaaggacaatatcaagagtggcagtccagttctggttcaagttcagctggaa
agagaggaggaggtgaccggacctgtcatcgcacctctcttcccacagaaacgtgaggag
ggctggtgggtggtgattggagaccccaagtctaacagcctcatctctatcaagaggctg
actctgcagcagaaagcaaaggtcaagctggactttgttgcaccagcgatgggcgttcat
aactacaccctgtacttcatgagtgatgcttacatgggctgtgatcaggagtacaagttc
agcgcagatgtgaaggaggctgacagcgagggagacagtgactcagactaa
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integrated database retrieval system
