Cebidichthys violaceus (monkeyface prickleback): 137868260
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Entry
137868260 CDS
T10484
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve04382
Cornified envelope formation
cve04510
Focal adhesion
cve04512
ECM-receptor interaction
cve04518
Integrin signaling
cve04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137868260 (col4a1)
04518 Integrin signaling
137868260 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137868260 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137868260 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137868260 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cve04147
]
137868260 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
cve00536
]
137868260 (col4a1)
Exosome [BR:
cve04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137868260 (col4a1)
Glycosaminoglycan binding proteins [BR:
cve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137868260 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137868260
NCBI-ProteinID:
XP_068561022
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MLLPSGTLLLLAALYCSVDLTGAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGIH
GPEGPPGPMGPTGGLGEPGATGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGLHGIPGCN
GTKGDRGRDGTPGFAGLQGPPGISGIPGMKGDPGGVIGIVPLKGDRGFPGTPGLPGSSGS
HGPIGPPGPRGYHGPKGEPGFPGPPGEMGDRLSYLSQKGEKGDTGFRGPPGPPGNPSEGT
GAHTTELVPGPPGEKGHPGDKGDKGYCTPHLNGVKGEIGPPGPTGKSGKDGEDGLKGQKG
FPGSVGYIGSQGEKGERGPPGHGDGSPGSPGPRGFPGVQGEKGFAGPQGEAGPPGRQVEG
PRGEKGQKGSVGEKGDRGVEGESLVGRPGQPGTTGSPGPPGLPLDPNECDNEKGAPGPTG
PPGLQGELGQKGDRGDTCVQCEGFGPPGLPGPQGPKGDRGPPGLVGGKGEKGVSGYSGQP
GKPGSPGIPGLIGVPGAVGEPGDIFANPGLKGDKGLTGLSGTTGQPGRDGQPGRDGLPGI
PGFKGEPAKEGIKGERGPDGDPGLIGPPGERGPPGLPGFGRPGETGEKGSHGRPGLPGTP
GPSGIKGEPGKGVSTPGPQGVPGTRGETGIPGLQGDRGLHGDSGVPGFPGEKGEHGPPGI
GFPGPPGPKGISGIPGSPGFPGEPGRPGQDGLTGQAGKPGQKGDPGRGLPGLKGSQGSPG
IVGFPGDKGTIGLPGVPGREGQTGAPGPQGIKGDVGPPGSRGVDGLPGAPGKGSPGAPGP
QGPAGESGPYGREGVKGEKGYPGPSGLDMPGLQGEKGISGFPGIPGSKGLPGPPGFPGRD
GHIGNQGWKGEMGVIGTPGVPGFPGPPGTSGSPGFRGDPGTTGPRGDIGETGTKGERGDQ
GLQGPPGNMSDVDMEHMKGEKGDIGNIGLPGGSGEKGHRGLPGNPGVPGKDGESGLPGQP
GEKGDPGFPGDPGRMGPTGQKGSVGEMGIPGVVGPKGTKGDIGTSGHPGFRGTDGQKGDK
GASGEPGIGFPGHPGEKGEIGQPGFPGSPGERGLKGHEGMSGKPGQQGIKGDKGLIGYTG
QTGRPGEKGTPGLPGAAGESGHDGRPGEGGLQGPPGVPGEKGDAGVDGIPGSSGERGDQG
LPGRGFTGPPGVLGGKGDKGSPGFPGTPGNPGVPGIRGDKGLPGSRGPQGETGEKGLTGI
SLEGPKGAKGETGQAGESGPSGVPGLSGVPGGDGQKGDKGDQGLPGFQGESGHKGDSGVT
GLPGQSGLPGIDGQKGERGLQGVPGFPGTRGNFGDIGFKGELGDRGFPGEKGNEGPPGPP
GPSTFIKGDIGFPGAQGLPGPQGPSGLPGQKGQQGVTGLLGPKGDDGIPGYHGQSGSKGD
PGLPGPQGPRGYPGPQGPDGVPGQVGHPGPSSMDHGFLVTRHSQTVEVPLCPEGTSLIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGEGIKPFISRCSVCEAPAMVIAIHSQTIMIPPCPHGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFRKPVPTT
LKAGNLRTHISRCQVCMKRT
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcaccctgttgctgctggcggctctctactgcagtgtagacctg
acgggggctgagggctgcggggcatcatgtggaaaatgcgactgcagtggtgtgaaagga
gcaaagggtgagcgtggatttcctggtcttcaaggtaatatgggatttccaggaatacat
ggacctgaaggtcctccaggaccaatgggccccacgggaggtctgggggaacccggagct
actggactgaaaggagtgcggggtcctcctggtctgccaggtttcccaggaaacccagga
ctaccaggcatcaatggaaatgatggcccaccaggtttgcatggtatcccaggttgcaat
gggactaaaggagacagagggagggatggcactcctggttttgctggtcttcaaggacct
cctggcatctcaggaattcctggaatgaagggcgaccctggtggtgtgattgggattgtt
cccctgaaaggagacagaggattccctggcacacctggattacctggatcaagtggatct
catggacctattggacctccaggacctcgaggctatcacggacccaaaggtgaacctggc
ttccctggccctcctggagaaatgggtgacaggctgtcctatctgagtcagaaaggagaa
aagggggacacaggatttcgtggcccacccggacctcccggaaatccatctgaaggaacg
ggagcacataccacagagctcgtacctggaccaccgggtgagaaaggacatccaggggat
aaaggagacaaaggctattgcaccccacatctcaatggtgtcaaaggagaaatcggtcct
cctggaccaacaggtaaatctggcaaggatggagaggacgggctgaagggacaaaaaggc
ttccccggatcagttggatacattggttctcagggtgaaaagggagaaagaggaccacca
ggtcacggtgatggttcccctggttctcccggtcctcgtggttttccaggggttcaagga
gaaaaaggttttgctggtcctcagggagaggcaggtccaccaggccggcaagttgaaggg
cctcgaggggagaagggtcaaaagggaagcgttggtgagaaaggagataggggtgtagaa
ggagagtctctcgttggacgtccaggacaaccagggaccactggatcacctggaccacct
ggactaccgcttgaccctaatgaatgtgacaacgagaaaggagctcctggcccaactgga
cctccagggttacaaggggaattgggacagaaaggtgacagaggagatacctgtgttcaa
tgtgaaggcttcggcccacctggattacctggcccccaaggccctaaaggagatcgagga
cctcctgggctagtaggcggcaagggagaaaagggtgtgtctggctattctggacaacct
ggaaaacctggttctccgggtattcctgggttgattggggtacctggtgctgttggtgag
ccaggagacattttcgcaaatcctggtctgaagggggacaaaggtctgactggtctttct
ggtacaacggggcagccgggtcgggatggacagccagggagagatggcctcccaggtata
cctggcttcaaaggagaaccagccaaagaaggcatcaagggtgagcgtggaccagatggg
gaccctggtcttattgggcctccaggagagaggggtccacctggcctgccaggcttcggt
cgaccaggggaaactggagagaagggcagtcatgggagaccaggccttcctggaactcct
ggaccatctggtataaaaggtgagccaggtaaaggtgtgagcactcctggacctcaggga
gtacctggaacacgcggagaaaccggcatacctggacttcaaggtgacagaggcctgcat
ggagactctggggtgccaggtttccctggagagaagggtgaacacggaccccctggaatt
ggatttccaggcccacctggccctaaaggaatcagtggaattccaggaagtccaggattc
ccaggagagcctggaagaccaggacaggatggcttgactggacaagccggtaaacctggg
caaaaaggtgacccagggcggggtcttccaggcctaaaaggctctcagggttccccagga
attgttggcttcccaggagataagggtaccattggactacctggtgttcctggacgagaa
ggccagacaggagcaccaggacctcagggaatcaaaggtgacgtgggacccccaggatct
cgtggagtggatggcttaccaggagctccaggtaaaggctcccctggagctcctggacca
caaggaccagctggagagtcaggaccatacggtagggaaggtgttaagggagaaaagggc
tacccaggtccttctggtctggacatgccggggcttcagggagagaagggaatcagtggg
ttcccaggaatcccaggttctaaaggactaccagggccaccaggcttccctggcagggat
ggacacattggaaaccaaggttggaaaggtgaaatgggggtcatagggacaccgggagta
ccaggatttcctggaccacctggtacatctggatctcctggattcagaggtgatcccggt
actactggacctagaggtgatattggagagactggaactaaaggagaaaggggagaccaa
ggtcttcagggacctcctgggaacatgagcgacgttgacatggagcacatgaagggcgag
aagggagacatcggaaacataggtctacctgggggctctggagagaagggccaccgtgga
cttcctggtaaccctggagtgccaggcaaagatggagagtctggattacctggacaacca
ggtgagaaaggagaccctggtttccccggagaccctggcaggatgggaccaactggtcag
aaaggcagtgtcggagaaatgggaataccaggtgtggttggtccaaagggtactaaagga
gatattggtacatcgggacatcctggattcagaggcaccgacggacagaaaggagacaag
ggagcatctggcgaaccaggtattgggttcccaggacatccaggagaaaagggtgagata
ggccagccaggtttcccaggatcacctggagagaggggtctgaagggtcatgagggtatg
tccggcaagccaggacagcaaggaatcaaaggagacaaaggactcattggttatacaggt
cagacgggtagaccaggtgagaagggaaccccagggctgccaggggctgcaggagaatct
ggtcatgacggtcggcctggtgaaggcggcttgcagggaccgcctggtgttcccggagag
aagggagatgctggagtggatggtatccctggatcctcaggggaaagaggagaccaaggg
ttacctggacgaggtttcactggaccacctggggtgcttggtggcaaaggtgacaaaggt
agtcctggcttccctggcactccaggtaatccaggtgtccctggtatcagaggcgacaag
ggacttccaggctcaaggggaccccagggggagacaggagagaaggggctcactggtatc
tctctggagggccctaagggagcgaagggagagacgggacaagccggagaatcaggacct
tcaggagtaccaggactctctggtgtgccaggcggagatggccaaaagggagacaaagga
gaccagggcctccctgggttccagggagagtcaggacataagggggactctggagttact
ggacttcctggacaatctggccttccaggtatcgatggacagaagggagagaggggattg
cagggcgtccctggcttcccaggtacaaggggtaattttggggacattggattcaaagga
gaacttggagacagaggattcccaggagaaaagggcaatgaaggaccccctggtcccccc
ggccccagcaccttcatcaaaggagatatcgggtttccaggagcacaaggcttaccgggt
ccccaggggccatctgggcttcctggacagaaaggacagcaaggtgtgacaggtcttttg
gggccaaaaggtgatgatggcattcctggatatcatggtcagtctggatccaaaggagat
cctggcctgccagggccacagggacccagaggataccctggcccccaaggacctgacggt
gttccaggtcaagtgggtcaccctggcccctcatccatggatcacgggttcctggtaacc
cgtcacagccaaacggtggaggttccactctgtcccgagggaacctccctcatatatgat
ggctactccttgctctacgtacaaggcaacgaacgctcccatggacaggacttaggtacg
gcgggcagctgtctaaggaagttcagccccatgcccttcctgttctgtaacatcaacaac
gtgtgcaactttgcctctcgcaacgactactcctactggctcacctcccctgagcccatg
cccatgagcatggcacccattactggtgaaggcatcaaacccttcatcagcaggtgttct
gtgtgtgaagccccagccatggtgatagcaattcacagtcagaccatcatgatcccacca
tgccctcacggctgggactctctatggattggctactcctttgtcatgcacacgagtgct
ggtgctgagggatcaggccaggctctggcctctcctggttcctgcctggaggaattccgc
agtgctccattcatcgagtgtcacggccgtggaacctgcaactactacgccaactcctac
agcttttggcttgccaccattgaagacagtgagatgtttaggaaacctgtccccacaacg
ctaaaagcaggcaacctccgaacacacataagccgctgtcaggtgtgcatgaagaggaca
taa
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integrated database retrieval system
