Cebidichthys violaceus (monkeyface prickleback): 137868341
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Entry
137868341 CDS
T10484
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03015
mRNA surveillance pathway
cve04530
Tight junction
Brite
Transcription machinery [BR:
cve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137868341 (sympk)
Messenger RNA biogenesis [BR:
cve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
137868341 (sympk)
U7-dependent histone pre-mRNA processing factors
137868341 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
INTS1_R4
Adaptin_N
Cohesin_HEAT
API5
Cnd1
Motif
Other DBs
NCBI-GeneID:
137868341
NCBI-ProteinID:
XP_068561176
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MEFTSEEGSQLTPHVVDMTTSERVVDLLNQAALIPTDEKLTVLKQVQELIINKDPSLLDN
FLDELIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLVANLNMLLKDDSVNVVKKAILT
LTQLYKVSLQWLVRSKAVSERQEACWDLVTQMKGDVLALLDSENDGVRTHAIKFTESLII
TLSPRTSDSDVPKRQESDTSLDKVPRDHSYIRYDVLCEEGKTALEKLLKFMVHPAISSIN
LTTTLGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHP
CSLEFQGQIGTLLLDLGMPQSEITRSTPAPREQRKRPRHEEYTEGKKVKMEPALIEDDED
KEEPAPLSVPKPAAVPVAQSAIDLTAEFLHPLLSPENVANLVLISMVYLPDVMPASFQAT
YTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDDAVKGEGNDEDPAAKDTFI
KRKVPAVMLGQAISVVGGYEKEKTPPPEAPAVVKRLPEPILPTGQTKMAGPSGRKKVFRL
SDVVQPLSDTEIEKLTSKAVRRILHSEKTIAQSGMSHVRVKLLSKLVTQFKGMMKEDVLQ
FILDDIRTRSDLAFSLLYQEYNTYLSHLPTGQLDSYDHCLYTLLSGLQEKPEQRDGLFTK
LVLEAPIITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKE
KVRTTALAFLKRMYEKDHLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEET
VRQCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVE
NCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQA
LPKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKAT
NLCFGEKNVYTSEVLAVVMQQLMEQSPLPILLMRTVIQSLTMYPRLGGFVMNILSRLIVK
QVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMREPLLQHVLSFTPHQ
QAHIPASIMSVLEVHKKPEPKPVEPVVEKEMEPVPAPVEEEAPTVTLEGPETPEQQQPAV
TKDEEEPMEQDEPAPVIQEETVDTVSQEELSRAEETQSPLPEPVEEPMADSQPEPSDLQE
PVKDVEADVTEPEAGSGSEDVE
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggagttcacttcagaggagggaagtcaactcactccccatgtcgtcgatatgaccacc
agtgaacgggtggtggatctgctgaaccaggctgccctgatacccacagatgaaaagcta
acggtgctcaaacaggtccaggagctcatcattaacaaggatccctctcttcttgacaat
ttcttggatgagttgatcgcctttcagactgacaagtctatcgaagtgagaaaattcgtc
attggcttcatagaggaagcatgtaaaagggacaatgagctccttctcagactggtcgcc
aatctgaacatgctgctgaaggatgacagtgtgaacgtggtgaagaaagccatcctcaca
ctcacccaactctacaaagtttctctgcagtggttggtgcgctctaaagccgtatcagag
aggcaggaggcatgctgggatctggtcacacagatgaaaggggatgtcctggccttactg
gactctgaaaatgatggcgttcgcactcacgccatcaagttcacagaatcattaatcatc
actctgtcaccgcggacgtcagactctgacgttcccaagcgacaggagagtgacaccagc
ctggacaaagttcccagagatcactcgtacatccgctacgatgtgttgtgtgaggaggga
aagactgcactggagaagctgctgaagttcatggtccatccggccatttccagcattaac
ctcaccacaacacttggctcgctggccactatcgcccgccagaggccgatgttcatgtca
gaggtggtgcaggcatatgagacgttgcatgcaaacctgccacccactctggccaagtct
caggtcagcagcgtgcgaaagaatctgaagctgcacttggtggcggtcctcaagcatccc
tgcagcctggagttccagggtcagatcggcactctgctgctggacctgggaatgccccag
agtgaaataacccgctctactccggcccctcgtgagcagcgcaaaaggcctcgccatgaa
gaatacacagagggaaaaaaggtcaagatggagccggccttgattgaggatgacgaggac
aaggaggagccagccccgctctcggttcctaaaccagctgctgttccagtagcacagtct
gccattgacctcacagctgagttcctgcaccctctgctctccccagagaatgtagccaac
ctggtgctcatcagcatggtgtacctgcctgatgtcatgccggcatccttccaggccaca
tacacacctgttgagtcagctggcactgatgcccaaattaaacatctggccaggttgatg
gccacgcagatgactgcagctgggattggtccaggacttgagcagtgcaaagccagagaa
gacgatgcagtgaagggcgaaggcaacgacgaggaccctgctgctaaagacacgttcatc
aagcgcaaagttccagctgtgatgttgggacaagccatctctgtggtgggaggttacgaa
aaagaaaagactccaccccctgaggctcccgccgtagtcaagaggcttcccgaacccatc
cttcctacgggacaaaccaaaatggcagggccaagtgggagaaaaaaagtgtttcgcttg
tccgatgtcgtccagcctttatcagacaccgagattgaaaagttaacctccaaagcggtc
agacgcatcctgcattccgagaagacgattgctcaaagtggcatgtcccatgtcagagtg
aagctcctctccaagctcgtgacgcagtttaaagggatgatgaaagaagacgtgctgcaa
tttattctggatgacatcaggacaaggagtgacctggccttttctctcctctaccaagag
tacaacacttacctcagccacctgccgaccgggcagctggacagctacgaccactgtctt
tacactctgctgtcgggcctgcaggagaaacccgagcagagggatggacttttcaccaag
ctggtgctggaggctcccattataaccgaatcagcactggaagtaatccgacgctactgt
gaggacgagtctcgggtgtatttgggcatgacgacgctgaaggagcttattgtcaagcgg
ccctcgagacagtttcagtatctgcatgtgcttctggatctcagctcacatgaaaaagag
aaggtgcggaccactgccttggcttttctcaagcgtatgtatgagaaagaccatctcagg
gactacattgagaagtttgccctgaactacatgcagcttctggtccatcccaaccctcca
tctctgctctttggggctgacaaagatacagaggtggctgccccatggactgaagagacc
gtgagacagtgtctgttcctctacctgtccctgctgcctctaaaccaccgactggtccac
gagctggcatcagtctacacggaggccatcgctgacatcaagcgcagcgtgcttcgagca
atagagcagcctatccgtggaatggggatgaactctcctgagctgctgctcttggttgaa
aactgtcctaaaggggcagagactttagtgacccgctgtctgcacatattgaccgataaa
gtgcctccatctccagagcttgtggagagagtgcgagacctttaccacaaacgagtgcca
gatgttcgtttcctaattccagtcattaatggccttgaaaagaatgaagtcatccaggct
ctccccaagctgatcaaactcaacccgattgtagtgaaggaggtgttcaatcgtctcctg
ggcactcagcacagtgagggaagttcatctgtgtctcctctcacccccggagacctgctg
attgccttacacaacatagattcaaccaaatgtgatatgaagtccatcataaaagccacc
aacctgtgctttggggagaaaaacgtgtacacgtcggaggttttggcagtggtgatgcaa
cagctgatggagcagagtcccctccccatcctgctcatgcgtaccgtcatccagtccctc
accatgtacccgcgactgggaggcttcgtcatgaacatcctgtcccgcctcatcgtcaag
caggtgtggaagtatcccaaggtgtgggagggatttgtgaagtgctgccagaggacaaag
cctcagtcgtacagcgtgctgctacagctgccgcccgcacagctgacgagcgtgtttgaa
cgctgcccggagatgagagagcctcttctgcagcatgtcctctccttcacacctcatcag
caagctcacatacctgcttccatcatgtcggtcctggaagtgcataaaaagccagaacca
aaacctgtggagcctgtcgtggagaaagagatggaaccagttcctgccccagttgaagaa
gaggctcccactgtgacactggaagggcccgagacgccagagcagcaacaaccagctgtc
acgaaagatgaggaggaaccaatggagcaagacgagcccgctccagtgatacaggaggaa
actgttgatactgtttcccaggaggagttgtcaagagcagaggagacacaatcgcctcta
ccagagccagttgaggaaccgatggcggattctcagcctgaaccctcagacctccaggag
cctgtgaaagatgttgaagctgatgtcacagaacccgaggctggaagcggcagcgaagat
gtagaatga
DBGET
integrated database retrieval system
