Cebidichthys violaceus (monkeyface prickleback): 137869368
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Entry
137869368 CDS
T10484
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03018
RNA degradation
Brite
Enzymes [BR:
cve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137869368 (mtrex)
Messenger RNA biogenesis [BR:
cve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137869368 (mtrex)
Spliceosome [BR:
cve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137869368 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
137869368 (mtrex)
Ribosome biogenesis [BR:
cve03009
]
Eukaryotic type
Pre-60S particles
Helicases
137869368 (mtrex)
Transfer RNA biogenesis [BR:
cve03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137869368 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
137869368
NCBI-ProteinID:
XP_068562851
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGEGLFSVFDDEQQTTASKKIPASLTPEIGKVINKNGTDKDAAPSAAVKREADSDG
GEEMVFGKKPRHETAPDLNLAEVMPQVKVEQVDTVEGCSHEVALPAGDEYKPLKPRVGKA
AKEYPFVLDPFQREAILCLDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWITHLHKQPCHVVYTDYR
PTPLQHYVFPAGGDGLHLVVDENGDFRDDNFNTAMQVLRDAGDSGGSGGGKWDPRGRKGG
TRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNREDEKRLVEEVFNNA
VDCLSEEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKMKK
YEEQYHSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNEEA
DFGWGVVVNFSKKTNVKTSTDSEPLYVVEVLVHCSKDCVKDAATEAAKPAAPGETGEMQV
VPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKDP
ALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQM
DKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQATAL
LSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLMD
VVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggagaaggcttgttcagcgtgtttgacgatgaacaacaaaccacc
gcaagcaaaaagatccccgcttctctgacaccagaaattgggaaagttatcaataaaaat
ggcaccgacaaggatgctgctccgtctgccgcggtcaagagggaggctgacagtgacgga
ggagaggagatggtgtttgggaagaaaccccgacacgagacagctcctgacctgaatctt
gcagaagttatgccccaagtgaaggtggagcaagttgacaccgtggaaggatgctcacat
gaggtggcgctgcccgccggtgacgagtacaaaccactgaaaccgagagtggggaaagca
gccaaggagtacccgtttgttctcgacccgttccagcgtgaagccatcttatgtctcgac
aacaacgagtcggtgctcgtgtccgctcacacctccgccggcaagaccgtctgcgccgag
tacgccattgcactggccctccgagagaagcagagagtgatcttcacgagccccatcaaa
gccctctccaaccagaagtaccgagagatgtacgaggagttccaggacgtgggactgatg
actggcgacgtcaccatcaaccccaccgcctcctgcctcgtcatgacaacagagatcctg
aggagcatgctgtaccgaggctctgagatcatgagggaggtggcgtgggtcgtctttgac
gagatccattacatgagagatgcagagcgcggcgtggtctgggaggagaccatcattctt
cttcctgacaacgtgcattacgtcttcctgtcagccaccatccccaacgcccggcagttt
gccgagtggattacccacctccataaacagccgtgccatgtggtctacacagactaccgg
cccactccactgcaacactacgtcttcccagcaggaggcgatggactccacctggttgtc
gatgagaatggagacttcagagatgacaacttcaacacagccatgcaggtgctgagagat
gcgggggattctgggggcagcggagggggcaagtgggacccgagagggcggaaaggaggc
actagagggccgtccagcgtgttcaagatagtaaagatgatcatggagaggaacttccag
cccgtcatcatcttcagcttcagcaagaaggaatgtgaggcctacgctctgcaggtggcc
aagctggacttcaacagagaggacgagaagcgtctggtggaggaggtgttcaacaacgcc
gtggactgtctttctgaagaagacaagaagctccctcaggtggagcatgtgctgccgctg
ttgaagagggggatagggatccatcacggaggcctgctgcccatcctgaaggagaccata
gagatcctcttctctgaaggcctgataaaggctctgtttgcgacagagacgttcgccatg
ggcatcaacatgccggctcgcactgtgctcttcaccagcgctcgcaagtttgacggcaag
aatcaccgctttatcacatcaggtgagtacatccagatgtccgggcgagccggcaggaga
ggaatggacgacaggggaattgttattttcatggtggacgagaagatgagtccagctgtg
ggcaaacagctgctcaagggctcagctgacccgttgaacagcgccttccacctgacctac
aacatggtgctcaacctgctgcgggtggaggagatcaacccggagtacatgctggagaag
tccttctaccagttccagcactacagggctttgcctggtgttgtggagaaaatgaagaag
tatgaggagcagtaccacagcattgagatccccaatgaggagggcgtggtcacttacttt
aaaatcagacagcagctggccaagctgggtaaagagatacaagagttcacccacaaaccc
aaatactgcctgcccttcttacagcccgggcggcttgtcaaggtaaagaatgaagaggca
gactttggctggggagtggttgtaaactttagcaagaagacaaatgtgaagaccagtaca
gactctgagccgctgtatgtggtggaggttttggtccactgtagtaaagactgtgtgaaa
gatgctgcgactgaagctgctaaacctgctgctccaggggagaccggagagatgcaggtg
gtcccagtgatgcttcacctcctgacctccatcagctcagttcgcctttacatccccaaa
gacctgaggccctttgacaaccgacagctcatgctcaagtccattcaggaggtgcagaaa
cgtttcccagatggtgttcctctgctggaccccatagacgacatgggcatcaaagatcca
gcgctgaagaaagttattcagaaagtggaggcctttgagcaccgcatgtactcccacccc
ctgcacagcgaccccaacctggagtctgtgtattccctctgtgagaagaaagctctgatt
gcagcagacgttcgaacggccaagcgggagctgaagaaagctcggaccgtcctgcagatg
gacaagctgaagtgcaggaagagagttctgcgacgcctcggcttcgccagcccgtccgac
gtcatcgagatgaaaggaagggtcgcctgtgagattagcagcgctgacgagctcctgctg
acggagatggtgttcaacggcctcttcaacgatctgacggtggaacaagccaccgccctg
ctgtcgtgttttgtcttccaggagaacgccagtgagatgccaaaactgaccgaacagcta
gcagctcccttgagacaaatgcaggagtgtgcaaagcgcatcgccaaagtctctgcggac
gccaagctggaggtggacgaggagacttacctgaaccagttcaagcctcacctcatggat
gtggtgttcgcctgggccaacggcgccacgttcgcccagatctgcaagatgacggacgtc
tttgaagggagtatcatccgctgcatgcgccgcctggaagaagtcctgagacagatgtgc
tccgcagccaaagccatcggcaacaccgagctggagaacaagtttgccgaaggaataacg
aagatcaagagagacatcgtattcgctgccagtctctacctataa
DBGET
integrated database retrieval system
