KEGG   Cebidichthys violaceus (monkeyface prickleback): 137869400
Entry
137869400         CDS       T10484                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cve  Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    137869400 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cve03041]
    137869400 (prpf4)
Spliceosome [BR:cve03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    137869400 (prpf4)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 NBCH_WD40 PRP4 Beta-prop_EML WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_Vps41 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_WDR11_1st WD40_like DUF7779 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 137869400
NCBI-ProteinID: XP_068562922
LinkDB
Position
Unknown
AA seq 506 aa
MSDDEDLAPAPKRTRVYYGSLEEKERERLSSESRRGGDGVKAGIKAGNINISSGEYLELE
ERVSERQNDALAAFEQRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLRSV
LSVVGPDALKKSRRDEEKAKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRAMKRLEAA
RAYREVPEATRAIRTQEQQNSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGLCK
LWSVPDCSLIRTLRGHSTSVGAVVFRPQAGVSLDQSDVSLASCATDGSVKLWNLESDEPV
ADIEGHSDRVSRVSWHPSGRFLGTTSYDNSWRLWDLEVREEILHQEGHSKGVHDIHFHPD
GSLAATGGLDAFGRVWDLRTGRCIVFLEGHLREIYSVHFSPNGYHLATGSGDNTCKVWEL
RNRKCLYTVPAHQNLLSSVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKVM
GVDVSPDGKLIATCSYDRTFKLWLSE
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtctgacgatgaggacttggctccggccccgaagaggactcgtgtttactacggcagt
ctggaggagaaagagcgcgagcgtctgagctcagagtcgaggcgggggggcgatggggtg
aaggccggcatcaaggcgggaaacatcaacatctcgtcaggagagtatctggagctggag
gagcgggtcagcgagcggcagaacgacgcgctcgccgccttcgagcagcgacggcgagcg
agacagatcaccgtctccacggacgacgccgaggtgaaggccggcctccgagcgctcgga
gagccaatcacgttgttcggagagggaccagctgaccgccgggagagactgcgcagtgtt
ctgtctgttgtcggtccggacgctctgaagaagtccaggagagacgaagagaaagccaag
agatcacaggacgagtgccagcagacgtggtaccacgaaggctccgcctccctgaaggac
gctcgcctctggttggccaaatactctctgccacgggcgatgaagcgtctggaggctgcg
cgcgcttacagggaagttcccgaagcgacgagggcgatccggactcaagagcagcaaaac
agtctgaggaatctgaacaacttctgcagtcagatcggagacgatcgaccaatcagcttc
tgccacttcagccccgactccaagatgttggccaccgcctcctggagtggcctgtgtaag
ctgtggtccgtccccgactgcagcctgattcgtacactcagaggacacagcaccagcgtc
ggtgcggtcgtcttccgcccgcaggccggagtctctctcgaccaatcagacgtcagcttg
gcctcctgtgcgaccgacgggtccgtgaagctgtggaacctagagagtgacgaaccggtg
gctgacatcgagggtcacagcgaccgggtgtctcgggtgtcgtggcacccttctgggagg
tttctgggaacaaccagttatgacaactcgtggcgtctgtgggatctggaggttcgggag
gaaatcctccatcaggagggtcacagtaaaggagtccacgacatccacttccaccctgac
gggtctctggctgctactggaggcctggatgccttcggtagagtgtgggaccttcggacc
ggacgctgcatcgtgttcctggagggacacctgagggagatctacagcgtccacttctca
cccaacgggtatcacctggcgacaggaagtggtgacaacacctgtaaggtttgggagctg
agaaacaggaagtgtctgtacacagtccccgcccaccagaacctgctgtcctctgtccgc
ttccaacccacagacggtcacttcctgttgaccggagcttacgacaacacggcgaaggtc
tggagtcacccgggctggacgccgctgaagacgctcgccggacacgaggggaaggtgatg
ggcgtcgacgtgtctcctgacgggaaactgatcgccacctgctcctacgaccgcaccttc
aaactgtggctgtctgagtga

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