Cebidichthys violaceus (monkeyface prickleback): 137872874
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Entry
137872874 CDS
T10484
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137872874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cve03019
]
137872874
03036 Chromosome and associated proteins [BR:
cve03036
]
137872874
Enzymes [BR:
cve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137872874
Messenger RNA biogenesis [BR:
cve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
137872874
mRNA degradation factors
5'-3' decay
Decapping complex
137872874
Chromosome and associated proteins [BR:
cve03036
]
Eukaryotic type
Gene silencing
piRNA pathway
137872874
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
137872874
NCBI-ProteinID:
XP_068567471
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MATARTENIGPVVMGLNKQNGQLRGQTKPASVQPAPTTQGKALGAAQIAGGAAQDGGGIK
FGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHTSGGDCDVEEIEE
KPGRQQDGT
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccagaacagaaaacattggcccggtcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagcttcagtccagccagcacccacaactcaagga
aaggctttgggtgcagcccagatagcaggcggtgctgctcaggacggaggaggcatcaag
tttggagatgactggaaaaagagcctaaagctcccacccaaagacaacagggtcaaaact
tcagatgtgacgtccacgaaggggaatgaatttgaagattactgtctcaaaagagaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctggacgggacattctggctcgggctaagaacggaacagggaaaagt
ggagcctatctcatcccactgctggagagaatagacctgaaaaaagaccacatacaggca
cttgtcatggtgcccacccgtgagctggctctgcaggtgagccagatctccatccagatc
agcaaacacttggggggggtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgtctggatgagaccgtgcatgttgtcatcgccacgcctggtaggattctg
gacttgataaagaagggagtggcaaaggtggatagagtccagatgatggtgatggatgag
gccgacaagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaagggcaggcagatcctgctctactctgccaccttccccatcagcgtgcagaagttc
atggccaagcatcttcagaaaccctacgagatcaacctgatggaggagctgactctgaag
ggcattactcaatactacgcctacgtcacggaaaggcagaaagtccactgcctcaacaca
ctgttctccaggcttcagatcaaccagtcgattatcttctgtaactccactcagagggtg
gagctgttggccaagaagatcactcagctgggctactcctgcttctacatccacgccaag
atgatgcaggaatacagaaaccgcgtgtttcacgacttcagaaatggactgtgcagaaac
ctggtctgcactgatctgttcaccaggggtattgacatccaggctgtcaatgtagtcatc
aactttgacttccccaagaatgctgagacttacctccatcgcattggaagatcagggagg
tttggtcacctgggcttggccatcaacctgatcacgtcagaggaccgcttcaacctgaag
gccatcgaggaccagctggtaaccgacatcaagcccatccccagcagcatcgacaagagc
ctctacgtggccgagttccacacgtccggcggcgactgcgacgtggaggagatcgaggag
aaaccaggacgccagcaggacggcacctaa
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