Cebidichthys violaceus (monkeyface prickleback): 137873873
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Entry
137873873 CDS
T10484
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve04510
Focal adhesion
cve04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137873873 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137873873 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cve00536
]
137873873 (col2a1b)
Glycosaminoglycan binding proteins [BR:
cve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137873873 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
137873873
NCBI-ProteinID:
XP_068568441
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEDDQEDVISCIQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQSPPIGAPGAKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGHRGSRGDKGEKGGLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG
PMGPRGPPGPSGKPGDDGEAGKSGKSGDRGPAGPQGARGFPGTPGLPGIKGHRGYPGLDG
SKGETGSVGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGESGPKGEFGPVG
MQGTTGPQGEEGKRGPRGEAGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPSG
ASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGSGEDGRPGPPGPQGARG
QPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPSGPPGPSGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGSQGLQG
PRGLPGTPGTDGPKGAIGPGGAGGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPEG
APGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPLGPAGFAG
PPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEKG
DAGEDGPSGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPVGASGAPGAPGVSG
PVGPTGKQGDRGESGAQGPSGPPGPAGARGMPGPQGPRGDKGEGGESGERGQKGHRGFTG
LQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPSGKDGGNGLPGPIGPPGPRGRSGETG
PSGPAGNPGPPGLPGPPGPGIDMSAFAGLGQIEKSPDPLRYMRADQASGNLRQHDAEVDA
TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVYCNM
ETGESCVKSKPASIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAVNTAAIQMTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGQWGKTVMEYRSQKTSRLPIVDIAPMDIGGTDQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtttgtcta
ttagccgttgtaagatgtcaagaggacgaccaggaggatgttattagctgtatacaagat
ggacagcgctatagcgacaaggacgtgtggaaaccagagccttgtcgcatctgtgtgtgt
gacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgccccaaa
cctgaaatcccatttggagagtgttgccccatctgcgcagctgaccagtctccacccatt
ggagcacctggcgctaagggtcagaaaggtgaacccggagacattaccgatgttgtagga
ccaagaggaccaggtggcccaatgggcccaccaggagagcaaggacaccgtggatcgaga
ggagacaagggagagaagggaggccttggtcctcgcggcagagatggtgagcctggcacc
cccggaaaccccggcccccccggacctccaggacctaatggaccccctggccttggtgga
aactttgctgctcagatggctggtggttttgacgagaaagctggaggcgcacagatgggt
gtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggcccctccggatca
cctggcccacaaggtttccaaggcaacccaggagaggcaggagagcccggacagtctggc
cctatgggtccccgtggcccccccggaccttctggaaaacctggagatgatggtgaggcc
ggcaagtctggcaaatcaggtgaccgtggacctgctggacctcagggagctcgtggattc
ccaggaactcctggcctgcctggcatcaagggacacagaggttatccaggtcttgatggg
tcaaagggagagactggatctgttgggtccaagggagagtctggtgctcccggagagaat
ggcgctcctggaccgatgggaccccgtggtttgcctggtgagagaggccgtcctggaccc
agtggagttgctggagcacgtggaaatgatggcttgcccggtcctgctggacccccaggc
cctgtcggtccctctggagctccaggcttccctggctcacctggttcaaagggagaagct
ggtcctactggtgcccgtggtcctgagggtgctcagggaccccgtggagagtctgggact
cccggatcctccggaccttccggcgcttctggaaaccctggtactgatggtatccctgga
tccaaaggatccgctggtgctcctggtattgctggtgctcctggtttccctggacctcgt
ggacctcccgggcctcagggagcaactggacctctcgggcccaaaggaacatctggagac
ccaggtatcccaggcttcaagggggagtctggacccaaaggagaatttggaccggttggt
atgcagggaactactgggccacaaggagaagaaggcaagagaggacctaggggtgaggct
ggtgctgctggaccacttggacctcctggagagagaggatcccccggtaaccgcggtttc
cctggtcaagacggtctggctggtcccaagggagcccctggtgagcgtggaccctctggt
gccagtggtcccaagggtgccaacggtgaccccggccgtcctggagagtctggtctgccc
ggtgccagaggcctgactggacgccctggtgacgctggtcctcaaggcaaagttggacct
tctggaggttctggtgaagacggtcgcccaggaccccccggcccacagggagcccgtgga
cagccaggtgtcatgggattccccggacccaagggagcaactggtgaacctggcaagtct
ggagagaaaggactgggtggagctcctggtctgagaggtctgcctggcaaagatggagaa
accggccctagtggaccccccgggccttctggccctgctggagagagaggagagcaagga
cagcctggtccctcaggtttccagggtctgcctggacctcctggcccccctggtgaggga
ggcaagcctggagaccaaggtgttcctggagagggtggagctgctggtgctactggaccc
agaggtgagcgtggtttccccggagagagaggagctgccggctctcagggtctgcaagga
cctcgaggtctgcctggaactcctggaactgacggacccaagggagccattggacctggt
ggtgctggtggagctcagggaccccctggcctgcagggtatgcccggagagagaggaggt
gctggcattcctggacccaaaggagacagaggtgaccttggagagaaaggacctgaaggt
gctcccggcaaagatggtggcagaggtctcactggtcccattggtcctcctggtcctggt
ggtcccaatggcgagaagggtgaatctggtcctgctggtccttctggagctcctggtacc
cgtggtgctcctggggacaggggtgagactggacctcttgggcccgctggatttgctgga
cctcctggttctgacggtcagccaggaatcaaaggagaacagggagaatctggacagaag
ggtgacgctggggcccctggacctcaaggaccctctggtgcccctggacctgcaggtcct
accggtgtttttggacctaaaggtgctcgtggtgctcagggacctcctggtgccactggt
ttccctggagctgctggccgagttggaccccctggtcccaatggtaatcctggacctgct
ggtcctgctggcccatccggtaaagatggacccaagggtgtgaggggagatggtggaccc
ccaggcagacagggtgacgctgggctccgtggtccagctggggctcctggagagaaggga
gatgctggagaggatggtccctctggtcccctcggtccttcaggtcctcagggtttggcg
ggtcagcgcggtatcgtcggtctgcccggacagcgtggtgagagaggtttccctggactg
cctggaccttctggtgagcccggaaagcagggagctcctggtggcagtggagaccgcgga
ccccctggacctgttggaccacctggacttactggacctgcaggagagcctggcagagag
ggcaacgctggatctgatggacctcctggtagagatggtgctactggaatcaagggtgat
cgtggtaacactggtcctgttggtgcttctggtgctccaggcgctcctggtgtttccggc
ccagttggtcccaccggcaaacagggagacagaggagagtctggtgcacaaggaccttct
ggacctccaggacctgctggagccagaggaatgcctggaccccaaggacctcgcggtgac
aagggtgagggtggagagtctggtgagagaggacaaaagggacacagaggcttcactggt
ctgcagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacctgct
ggaccttctggacaaagaggaccacctggacctgttggccccagtggaaaggatggtgga
aacggtctgccaggacccattggaccccctggaccacgtggtcgtagtggagagaccggt
ccctctggtcctgctggaaaccccggaccccccggtctccctggtccccctggcccaggc
attgacatgtccgccttcgctggtcttggtcagattgaaaagtcccctgatcctctcagg
tacatgagggccgaccaggcttccggaaacctccgtcagcacgatgctgaggtcgacgcc
actctcaaatctctcaacaaccagattgagaacatccgcagcccggagggatccaggaag
aacccggctcgcacctgcagagacctgaagctctgccatcctgactggaagagcggagac
tactggattgatcccaatcagggctgcaccatcgatgccatcaaggtctactgcaacatg
gagacaggagagtcctgcgtcaaatccaagcctgccagcatccctcgcaagaactggtgg
tccagcaagagcaaggaccgcaaacatgtctggttcggcgagacaatgaacggaggattc
cacttcagctatggtgacgacagcctggcagtcaacactgctgccattcagatgactttc
ctgagactgctgtccaccgaggcttctcaaaacctcacctaccactgtaagaacagcgtg
gcctacatggacgcctcaacgggcaacctgaagaaggccgttctgctgcagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggacggc
tgcacgaaacacacgggacagtggggcaagacagtgatggaatacagatcgcagaagacc
tctcgtctgcccattgtagacattgcacccatggatattggaggaacagaccaggagttc
ggagtggaagtcggggcagtctgcttcttgtaa
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integrated database retrieval system
