Cebidichthys violaceus (monkeyface prickleback): 137882348
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Entry
137882348 CDS
T10484
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
137882348 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cve03400
]
137882348 (msh6)
DNA repair and recombination proteins [BR:
cve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
137882348 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
137882348
NCBI-ProteinID:
XP_068580716
LinkDB
All DBs
Position
Unknown
AA seq
1379 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKPKPSPSPTEADLPSSVEKSSSSPKEQAKQTPQQPTKTNKV
NPKSNDKSSKGGFNKLFGDKAPAAKQSSNTCTFSAGALVWAKLEGHPWWPCMVVPQPLTG
QQMRGRGRSQRIHVHFFDEPATRGWVSTKYIREYQGSDSSDAKTGGLFFSGKPAIRRSVE
LADGVMFDSPEKRLKMPVCMDPSDEEEEDDEEEEEMEVDGSTVTDEEGSDEEEQKNEKVK
SSKVSLRSSRASTEQGNKAKRRRIIVASDSDGSDEEFKPEQAAPSSEEEEEAAATVSSEE
ESTHESEAESPIKPVKRKRPAEKPAAAKPATPSSAPKRAPAAVAVDTKSRLSAFSAPDSF
ESQANGSGTGGGATVWDHEKLEWCQDGRRKDGRRRRQTEDDYDPSTLYVPEDFLNRSSPG
MRRWWQLKSQMFDTVIFYKVGKFYELYHMDAVIGVNEMGLTFMKGTWAHSGFPEIGFGRF
SDVLVQKGYKVARVEQTETPEMMEVRCKSMARPTKFDRVVRREVCRIITRGTQTYSVLDG
APSESQSKFLLSLKEKAEGESSGCCRTYGVCFVDTSVGYFHVGQFPDDRHCSRLRTLIAH
FAPAEVLFEKGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFREAAG
KDQGTGTNFLPALLKTMTSESDSLCLTPKEGCELGLSALGGCIFYLKKCLVDQELLSLAN
FEEYVPVDVELEKATGPASFFARTRQRMVLDGVTLANLEIFQNGSGGTEGTLLERLDTCS
TPFGKRLLKQWLCAPLCNPTSIKDRLDAVEDLMGAPAQATEVSDLLKKLPDLERLLSKIH
SIGTPLKGSDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIITVLAPVSDESQSAL
LRQVGRPKSAEDGLFPDLSAELRRWETAFDHQKARTTGVITPKASFDPEFDQALASIKSC
ERELQDYLDRQKKRLGCKNMSYWGTGRNRFQMEVPDGVSERNIPEEYEVKSTKKGWKRYV
TKETERLFSELQGFEEKRDAALKDCMRRLFFNFDKNYKDWKTAVECMAVIDVLLALSRYS
QGGDGPMTRPQVVLPEGDDPVLTFLDLTGSRHPCVTKTFFGDDFIPNDVFIGCPGSSDTD
EGKEHASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCHVPAESLRFTPVDRVFTRLGASD
RIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKICC
RTLFSTHYHSLVEDYASNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFN
AARLASLPEAVIQSGHRKAREFEKSTISLRLFKKLCQFAEDATPGATRFSSLVQMLNAL
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcccttttcaattttttcaccaagtctccgccgccggtctccaag
ccgaagccgagtccctcaccgacggaggcggacctgccttcctccgtggagaagtccagc
tcctctccgaaagagcaagctaagcagacaccgcaacaaccaaccaagaccaacaaagtt
aacccgaaaagtaacgacaagtcttcgaaaggtggattcaacaaactattcggcgacaag
gccccagcagccaaacaaagcagcaacacatgcacattcagtgctggtgcccttgtgtgg
gccaagctggagggacacccctggtggccgtgcatggtggtgccccaacctctgactgga
cagcagatgaggggccgcggtcggagccagcgcatacacgtccacttctttgatgaaccc
gctaccagaggatgggtcagcaccaagtatatcagagagtaccaaggctctgacagcagt
gacgctaaaacaggagggttgttcttcagcggcaagcctgcaatccgtcgttcagtggag
cttgctgatggagttatgtttgacagccctgaaaaaagactgaagatgcctgtctgcatg
gatccatctgatgaggaggaggaggatgacgaggaagaggaagaaatggaggttgacggg
tcaacagtgactgatgaagagggcagtgatgaggaagaacagaaaaatgagaaagtgaag
tcgtccaaagtcagtctccgttcatcccgtgcttcaacagaacagggaaataaggccaag
cgccgccgcataatcgtagcttccgacagtgatggatcggatgaggagttcaaaccagaa
caggctgcgcccagcagtgaggaggaggaggaagcagcagcaacggtgagcagtgaagaa
gagagcacacacgagtcagaagcagaaagccccatcaagcctgtgaagcgcaaacgtccg
gcggaaaagcccgctgctgcaaagcctgctaccccgtccagcgcaccaaaacgagctcca
gcggccgtcgcagtcgacacaaagtctcgtctgtcggccttctcggcccccgacagcttt
gagagccaggccaacggatccggcaccggtggaggcgccacagtttgggaccatgagaag
ctggagtggtgtcaggacggcaggaggaaagacggccggaggcggcggcagacggaggac
gactacgatccctccaccctgtatgtgccggaagacttcctcaacagaagcagtcccggt
atgcgccggtggtggcagctcaagtctcagatgttcgacacggtcattttctacaaggtg
gggaagttttacgagctctaccacatggacgccgtgatcggagtcaatgagatgggactg
actttcatgaaggggacctgggcgcactcgggcttcccggagatcggctttggccgtttc
tccgacgtcctggtgcagaaaggctacaaggtggcccgcgtggagcagacggagactcca
gagatgatggaggtgcgctgcaagagcatggccaggcccacgaagttcgaccgtgtggtg
agaagagaagtgtgtcggattatcactcgcggtacccaaacctacagcgtgttggacggc
gctccctccgagagtcagagcaagttcctgctgagtctaaaggaaaaggccgaaggagaa
agctcgggttgttgccgcacctacggagtctgcttcgtcgacacctctgtgggttatttc
cacgtcggccagttcccagacgatcgtcactgctctcgcctgcgcaccctgatcgcacac
tttgccccggccgaagtgctctttgaaaaggggaacccatccgtcgaaacgcgcaaaata
ctcaaggcctctctgtcctctgctctgcaggaaggactcaatgcaggcacccagttctgg
gacgctcagaagactctgaaaaccctctcagaagaagattactttagagaggctgctggc
aaggatcagggaacggggaccaacttcctccctgctcttctaaaaacgatgacctctgag
agcgattccctgtgcctcactcctaaagagggctgtgagctgggactgtcggcactgggc
ggatgcattttctacctgaagaagtgtctggtggaccaagagctgctctctttggccaac
tttgaagaatacgtccctgtcgatgtggagctggagaaagccaccggaccggccagtttc
tttgcccggacccgtcagcggatggtcctcgacggagtgactctggccaacttggaaatc
tttcagaacgggtcgggaggaacggaagggactctgctggagcgtctggacacctgctcg
accccgttcggcaagaggctgctgaagcagtggctctgcgctcctctgtgcaaccccaca
tccatcaaggaccggctggatgcggtggaagacctgatgggcgctccggctcaggccacc
gaggtctcagacctgctgaagaagctcccagatctggagcgtctcctgagtaaaatccac
agtatcggcacccctctgaagggctcggatcaccccgacagccgggcggtgctctacgag
gaggtcacctatagcaagcgcaagatagcggacttcctctcggccctagaaggtttcaaa
accatgcaggagataatcaccgtcctcgctccagtgtcggacgaatctcaatccgcattg
ctccgtcaagtcggccgtccgaaaagtgccgaggacggcctctttcctgacctctctgcc
gagctgaggcgctgggagacggccttcgaccaccagaaagcccgcaccaccggggtcatc
acccccaaagccagctttgacccggagttcgaccaggctctggcctccatcaagagctgc
gagcgagagctgcaggactacctggaccgacagaagaagagactcggctgtaagaacatg
tcctattggggaaccgggcggaaccgcttccagatggaggtgccggacggcgtctccgag
aggaacattcctgaggagtacgaggtgaagtctacgaagaaaggttggaagcgctacgtg
accaaggagacggagcggctgttctcagagctgcaagggttcgaggagaagagagacgcg
gccctgaaggactgcatgaggaggctcttcttcaacttcgacaagaactacaaagactgg
aagaccgccgtggagtgcatggcagtgattgatgtgctgctggcgttgtcccgctatagt
cagggcggagacgggccaatgacccgtccacaggtggtcctccccgagggggatgacccg
gttctgaccttcctcgacctcaccggatcccgccacccctgtgtcaccaagaccttcttc
ggcgacgacttcatccccaacgacgtcttcatcggctgccccggcagcagtgacaccgac
gagggaaaggagcacgcctcctgtgtcctcgtcacggggcccaacatgggtggaaagtct
actctcatgagacagtgtggacttgtaatcatcctggctcagctgggttgccatgttcct
gccgagagcctgcgcttcacaccggtcgaccgggtcttcactcggctgggagcctccgat
cgcatcatggctggagagagcaccttcttcgtggagctaagtgagactgccagcatcctg
caccacgccacaaagcactcgcttgtgctcctggatgaattagggaggggcacagccaca
tatgacggcacagcgattgccagtgctgtcgtgaaggagctcgctgagaagatctgctgt
cgcaccctcttctccacacattaccactctctggtggaggactacgccagcaaccccgct
gtgcggctgggccacatggcgtgcatggtggagaacgaatgtgaggatccgagtcaagag
accatcacgttcctctacaagttcatcactggcgcttgtccaaagagttacgggttcaac
gccgctcgactcgccagcctgccggaggcggtcatccaatcaggacacaggaaggccaga
gagtttgagaagagcaccatcagcctccgactcttcaagaagctctgccagtttgctgaa
gacgccacaccgggagcaacacgcttctcttcactcgttcagatgctcaacgccctgtag
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