Cebidichthys violaceus (monkeyface prickleback): 137886982
Help
Entry
137886982 CDS
T10484
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve04510
Focal adhesion
cve04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
cve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137886982
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
SNARE
Amnionless
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
137886982
NCBI-ProteinID:
XP_068585825
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFGFVDSRTVLLLVASQVVLLSVVRCQQEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPLIPSGECCPICPADASAPIETFGAKGQKGEPGEIADVVG
PKGPPGPMGPSGEQGGRGEAGAKGDKGNIGPRGRDGEPGIPGNPGPPGSPGPAGLGGNFA
AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGEAGEPGPAGALG
PRGPPGPSGKPGSDGDAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGSSGENGAPGPMGPRGLPGERGRSGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGSEGAQGPRGEAGTPGSPGPSGASGNPGTDGIPGSKG
SAGGAGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPIGPLG
APGPAGEEGKRGARGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGVGGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKTGEKGLVGRPGLRGLSGKDGETGSSGPSGPAGPAGERGEQGQPG
PSGFQGLPGPSGAPGEAGKPGDQGVSGEGGVPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGTDGPKGAIGPNGAAGTQGPPGLQGMPGERGTGGISGAKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGAGGPTGATGVRGAPGDRGEIGPHGPAGFAGPPG
SDGQPGAKGELGESGQKGEGGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAAGATGFPG
AAGRVGSPGPNGNPGSAGPAGSAGKDGPKGARGDAGLPGRQGDSGLRGPAGAQGEKGEAG
EDGPPGVDGPSGPAGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGASGSAGDRGPPG
PVGPPGLTGPSGETGREGSAGSDGPPGRDGSTGIKGERGNTGPAGAPGAPGAPGSTGPVG
PLGKQGDRGEGGAQGPAGPSGPSGARGMAGPQGPRGDKGESGEAGERGQKGHRGFTGLQG
LPGPPGSSGDSGAAGPAGPNGAKGPPGPSGPAGKDGSNGLLGPIGPPGPRGRSGESGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
TLNSQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGNYWVDPNIGCIADAIKVFCNMESG
ETCVSAGIAEIPKKNWWTSKGKDRKHVWFGETMNGGFHFNYAEDGPIANAGSIQLTFLRL
LSTEASQNLTYHCKNSVAYMDQATGNLKKALKLQGSNDVEIRAEGTSRFTYTVLEDGCKK
HTDRWGKTVFEYKTQKTTRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctttgtggattcaaggactgttctgctactcgtagcgtcccaagttgtttta
ctatccgtggtcagatgtcagcaagaggacgaccaggaggcaggcggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgcatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgtgccaac
cctctcatcccatctggagagtgctgtcccatctgccccgccgatgccagtgcccccatt
gagacatttggtgctaagggccagaaaggtgaaccaggagagattgcagatgtcgtagga
ccaaaaggaccaccgggccctatgggcccctcaggtgagcagggaggacgcggagaagct
ggcgctaagggcgataagggaaatattggacctcgtggaagagatggtgagcccggcatc
cctggaaaccccggaccccccggatcacctggacctgcaggacttggagggaactttgct
gctcagatggccggaggtttcgatgagaagtccggaggcgctcagatgggtgtgatgcag
ggaccgatgggtcccatgggtcctcgtggtccccctggacctagtggagctcctggccca
caaggtttccaaggtggacctggagaggcaggagagcctggtcccgctggagcattggga
cctcgtggaccacctggaccttctggaaaacctggtagcgatggtgacgctggcaaacct
ggaaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcaccctggtctggatggagctaaggga
gagaccggtgccgcaggagccaagggcgagtctggttcctccggagagaacggcgcccct
ggacccatgggcccacgtggtctgcccggcgagaggggacgttctggagctgccggagct
gcaggtgcccgtggaaatgatggtctgcccggtcctgctggtccacctggacccgtcggt
cctgctggagctcccggtttcccaggatctccaggatccaagggagaagctggtcctact
ggagcccgtggatctgaaggagcacagggacctcgcggagaggccggtaccccaggatcc
cctggaccctccggagcatcgggtaaccccggtactgatggtattcctggatctaaagga
tctgctggtggtgctggtattgctggtgctcctggattccccggccctcgtggcccacct
ggaccacagggagccacaggacctctggggccaaagggacagtctggagaccctggtctt
cctggattcaaaggtgaagctggacccaaaggagagcttggccccattggtcctctaggg
gcccctggtcctgccggtgaagaaggaaagagaggcgccagaggagagcctggatctgcc
ggaccacttggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcag
gacggtcttgctggcgctaagggtgcccccggtgaccgcggtgttcctggtgctgctggg
cccaaaggtgttggtggagatcccggacgcacaggagagtccggcctccccggagccaga
ggtctcaccggtcgtcccggagatgctggtcctcaaggcaaagttggaccttctggtgct
tctggtgaggacggtcgccccggcccccccggccctcagggagcccgtggacagccagga
gtgatgggattccctggaccaaagggagccaatggtgaagctggaaagacaggagagaag
ggtcttgtgggtcgtcccggtttgagaggtctgtctggaaaagatggtgagactggttca
tctggaccttctggccccgctgggcctgctggagagagaggagagcaaggacagcctgga
ccttccggcttccagggtctgcctggaccatctggtgccccaggagaggctggaaagcct
ggagaccagggtgtttctggagagggcggagttcctggtgctgttggacccagaggtgag
cgtggtttccctggtgagaggggcggtgctggagctcagggtcttcagggacctcgtgga
cttcccggaacacctggaactgatggacccaagggagccattggacctaatggagctgcc
ggaacccagggcccccccggcctgcagggtatgcctggagagagaggaactggtggaatc
tcaggagccaagggagacagaggcgacaacggacagaaaggacccgagggagctcctgga
aaggacggcggaagaggtttgactggtcctattggtcctcctggcccatctggacccaac
ggcgccaagggagaaactggagctggtggccccactggtgccactggtgttcgtggtgct
cctggtgaccgtggtgagatcggtcctcatgggcccgccggcttcgctggacctcctggt
tcagatggtcagcctggcgctaagggagagcttggggagtctggacagaagggcgaaggt
ggttctcctggacctcagggaccatctggtgctcctggacctgtgggacctactggtgta
tctggacctaaaggtgcacgtggtgctcagggtgctgctggcgctactggtttccctggt
gctgctggcagagttggatctcctggccctaacggtaacccgggttctgctggccccgct
ggctctgctggtaaagacggaccaaagggtgctcgcggtgatgccggcctcccgggaaga
cagggagacagtggtctccgtggacctgctggcgcacaaggagagaagggagaggctgga
gaggatggaccacctggtgtcgatgggccttcaggtcccgcgggtctgggtggatctcgt
ggtattgttggtttgcccggtcagcgtggagagagaggtttcgctggtctccctggacct
tctggagagcctggtaaacaaggagcttctggctctgctggcgaccgtggacctcctgga
cctgtgggaccccctggacttactgggccttctggagagactggcagagagggttccgct
ggatcagatggacctcctggtagagacggatctactggaatcaagggagagcgaggtaac
accggtcccgccggcgcccctggagctcccggtgcccccggttccaccggacccgtcgga
cccctcggcaagcagggagacagaggagagggcggcgctcaaggacctgcagggccctct
ggacccagcggcgctagagggatggctggaccccaaggaccacgtggggacaagggagag
agtggcgaggctggagagaggggacagaagggtcaccgtggattcactggtctgcagggt
cttcccggacctcctggttcctctggagattctggagccgccggacccgccggaccaaac
ggagctaagggaccacctggaccatccggacctgctggcaaagacggatcaaatggactg
cttggccccattggaccccccggacctcgtggacgttctggagagtctggtcctgctggt
cctcctggtaacgccggaccccctggcccacctggtcctcctggcccaggcatcgacatg
tcggccttcgccggtctgggtcagaccgagaagtcccccgatcctctcaggtacatgagg
gccgacgaggcctccagctccctgaggcagcatgacgtggaggtcgattccacgctgaag
acgctcaacagccagatcgagaacctgcgcagccccgacggcagccagaagaaccccgct
cgcacctgcagagacctgaagctgtgccaccctgagtggaagagtggtaactactgggtt
gatcccaacatcggctgcatagccgacgccatcaaggtcttctgcaacatggagagcgga
gagacctgcgtctccgcgggcatcgccgagataccgaagaagaactggtggaccagcaag
ggcaaggaccgcaaacacgtctggttcggagagaccatgaacggaggattccacttcaac
tacgccgaggacggccccatcgccaacgccggcagcatccagctgaccttcttgaggctc
ctgtccaccgaagcgtcccagaacctcacctaccactgcaagaacagcgtagcctacatg
gaccaggccacaggcaacctgaagaaggccctgaagctgcagggctccaacgacgtggag
atccgcgcagagggcaccagtcgcttcacgtacaccgtgttggaggacggctgcaagaaa
catacagaccggtggggcaagactgtctttgagtacaaaacacagaagaccacccgtctg
ccaatcgtggacattgctcccatggacatcggcggagcggatcaggagttcggcgtcgaa
gtaggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
