Cebidichthys violaceus (monkeyface prickleback): 137888004
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Entry
137888004 CDS
T10484
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
137888004
NCBI-ProteinID:
XP_068587365
LinkDB
All DBs
Position
Unknown
AA seq
1622 aa
AA seq
DB search
MELRLGFRITLVLVILALTLSGERVEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VANIVESFDVAPDKTRVAVVRYSDRPTTEFTLGKHRTLEDVKRAARNIRYLGGNTMTGDA
ISYTTTDIFTERNGARPTARGIQRVAILLTDGRSQDYVLEPSKAAAKAGIRMFAVGIGEA
LKVELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTSY
GLEEVPGFNLMEHFNVRDILGTREDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQVFDKYGIPQVSIRLDGENKGVEYNAVGLTKDAVRAVFKDPEVDN
LFDRSWHKIALSVEAKSVSLYLDCKHIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAELETCCDIPNGPCPKKVVTEAPPVQIPTPTPTSVEQQRGPQVNCSCPA
GDKGEIGAPGVAGPKGGKGDTGLKGAIGAQGIRGEKGETGKIVSVRGDRGEKGDTGRIGL
TGAPGQKGEKGVGGVPGIDGLSGDKGDKGEAGLAGASGLTGQAGQKGIQGDEGSPGAPGP
KGVTGESGGKGEKGTPGDRGQAGFDGFPGKPGVPGKDGLSGLVGAPGPSGNNGIKGERGL
RGLPGDVFQKEGLHGDKGDAGASGPPGPEGPPGPQGPPGLQGLPGEPGEFGQRGKKGESG
LPGVDGLPGAPGPQGPSGPPGSQGHTGPPGLPGEIGFSGKHGEPGKPGLPGKDGLDGLPG
NDGALGPRGERGADGFAGKPGPKGDDGPPGPRGPPGERGAPGSPGQTGGTGVRGDRGVPG
ERGQDGPLGPKGEKGDKGEVGARGIPGIPGNVANVIPEPGEPGEPGEKGEKGDQGKPGEI
GQRGLPGEQGFKGPPGLAGPKGDTGPPGETGRVGDSGPPGIVGPPGARGLPGNVGIPGII
GPPGPAGQRGDKGEPGKPGQSGPTGPPGDGGLTGPPGPPGKGKEGQNGDPGPQGIQGPPG
QKGQTGSRGEPGSPGDRGSAGEGKVGQPGPPGNDGLLGPAGIRGLPGVAGPQGPAGHNGL
PGRPGDKGSPGDPGKAADLSDLNLKDVCSDCPAGPPGPPGLPGVPGDKGHLGPPGKNGQD
GYQGPPGTAGAQGPPGTDGGKGIKGDRGPPGGPGEKGDKGHPGPPGHPGTAGLMGTPGND
GQPGPVGPPGSPGEKGKEGLKGIQGPPGLPGLIGQPGKMGKDGRAGEPGEPGKQGEPGPQ
GNSGLRGLPGFKGHRGESGAPGPKGEDGKPGSSGRDGKPGKEGSTGPPGREGLSGPRGES
GKPGEPGPSGKSGLPGTPGLRGDKGEAGNPGLPGFSGPKGPAGPPGPIGPEGKQGMPGRV
GDRGLKGEKGDSGVKGDKGQSGDPGMPGNPGPPGRKGHTGMMGMSGPPGELGAPGPQGSS
GNPGIPGQRGESVSLEQMRRLIQEELAKQLDAKMAYLMAQIQPAHVKSTAGRPGPPGPSG
KDGSSGRPGPPGEPGMPGQNGGEGSRGPMGPKGDRGTRGEKGEPGIGERGEQGPSGPIGP
AGLPGYGKDGGPGQAGAQGEPGNPGPHGQAGPPGPTGQCDPTQCAYYASLAHRPHTKNVK
GT
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggaattacgactgggattcaggatcaccttggtcttggtcatcctggctttgactctt
tccggcgagagagtggaagctcagagggcagggtgtaaaaacgtccactatgacttggcg
ttcatcttggatacatcttccagtgttggaaaggagaattttgagaaaatcaggcaatgg
gtggccaacatcgtcgagtctttcgatgtggcaccagacaagacgagggtagccgtggtt
cgctacagcgacagacccaccaccgagttcaccctgggtaaacacagaaccttagaggac
gtgaaacgagctgcccgcaacatacgctacctgggggggaacacaatgaccggggacgcc
atcagctacaccaccaccgacatcttcacggagcggaacggagccaggccgacagccaga
ggcattcagagggtggccatccttctcacggatggccgaagccaggattatgttctggag
ccctccaaggcggctgccaaagctggcatcaggatgtttgccgtgggcatcggggaggcg
ctgaaggtggagctggaagagatcgcggccgagccgaagaacgcccacgtcttccacgtg
acggacttcaatgccattgacaagatcagaggcaggctgaggaggaggctctgcgagaat
gtcttgtgtccgaacatgaaggtccaacctgatcggtttaagcccaacagcaccagttat
ggtcttgaagaggttccagggttcaacctcatggagcacttcaacgtgagagacatcctg
ggaaccagagaggacgaaggccaaagttcttacgttcgccttggcaccatgcccattgta
cagcagacggaggatgtgtttcctcaagggctgccagacgaatatgccttcgtgacgacg
ttcaaattcaggaaaacctcaaggcgtgaagattggtacctctggcaggtctttgacaaa
tatggaatcccacaggtgtccatccgcctggacggtgagaacaagggggtggagtacaat
gccgtcggcctgacaaaagacgccgtcagagctgtgttcaaggaccccgaagtcgacaac
ctgtttgaccgcagctggcacaagattgccctcagcgtggaggccaagtccgtgtctctg
tacctggactgcaaacacatccagactctgcccattgaagacagggaggacattgatatc
caggggaagacagtgattgggaagaggctgtacgacagcgtgccaattgattttgacctc
cagaggatgatgatttactgtgattccaagcacgcagagctggagacctgctgcgatata
cccaatggaccttgccccaagaaagtggtcacggaggccccccccgttcaaatccccact
ccgacgcctacttctgtggagcaacaaagaggccctcaagtgaactgttcgtgccctgca
ggagataagggagagatcggtgcgcccggcgtggcaggtcctaagggtggaaagggcgac
actggccttaagggcgccatcggagctcaaggaatcagaggagaaaaaggagaaactggc
aaaatagtctctgtcagaggtgacagaggtgagaagggtgacacaggcaggatagggttg
acaggtgctcctggacaaaaaggagagaagggagttggtggagtgccaggcatcgatggc
ttatctggagacaaaggagacaaaggtgaagcaggactggctggtgcttcagggctgaca
ggtcaagctggtcaaaagggaattcaaggggatgaaggaagtcctggcgccccaggtcca
aaaggtgtcactggtgaatcaggtggaaaaggagaaaaaggaactccgggagaccggggt
caggcaggtttcgatggattccccggcaaacctggtgttcctgggaaagacggtttgagc
ggactggttggtgcacccgggcccagcggaaataacggcatcaagggggagagaggcctt
cgcggattacctggggatgtgtttcaaaaagaaggtttacacggtgacaagggagatgct
ggagcttctgggcctccagggcccgagggccccccggggcctcaaggtcctccgggtcta
cagggacttcctggggaacccggagagttcggccagagggggaagaaaggtgaaagtgga
ttgcctggagtggatggccttcctggagctcctggtcctcagggtccatctgggccacca
gggagccaaggacacactggacctcctggtctacctggtgaaattggattttcaggcaaa
catggagagcctggaaagcccggtcttcctggtaaagacggtctggacggtcttcccgga
aacgacggtgctctggggcccaggggagagcgcggagcagatggttttgcggggaagccc
ggacccaagggcgacgatgggcctcccggaccaagaggacctccaggggaaagaggagca
cctggttcccctggtcaaacaggtggtactggagttagaggagacaggggtgtgccggga
gaaagaggacaggatggaccgcttggaccaaaaggggaaaagggagacaagggagaagtg
ggagccaggggaatacctggcattccgggaaacgtggccaatgtcatccctgagcccggt
gaacctggggaacctggagagaagggagagaagggggaccaagggaaaccaggagagatc
ggtcaacgagggttacccggtgaacaaggcttcaagggaccacccggactagcgggtcca
aaaggagacaccggaccaccgggagagacgggacgtgtcggagactctggtccacctggc
attgtcggtcctccaggtgctcgtggattaccagggaatgtgggcataccggggatcatt
gggcctcccggtccagccggacagagaggagacaagggtgaaccaggtaaaccgggacaa
tcgggtcccacgggcccacccggagatggcggtttgactggaccccccggacctccagga
aaggggaaagaagggcaaaatggggatccaggaccacaaggaattcaaggacccccgggg
caaaagggccaaaccgggtcgcgaggagaaccggggtcacccggggacaggggttccgca
ggagaaggcaaagtgggacaaccgggccctccgggaaatgatgggctccttggacctgcg
ggcattaggggtctgccaggggtcgccggtcctcagggcccagcaggacataatggttta
ccaggaaggccgggagacaagggatcaccaggagatcctggaaaggcagcagacctctct
gacctaaatctgaaggatgtttgctcagactgccccgcgggtccaccaggaccgcccggc
ctcccaggagtcccaggggacaaaggacacctcggacctccggggaaaaacggtcaagat
ggttaccagggcccgccgggaacagccggagctcaagggccccccggaaccgacggagga
aagggtattaaaggtgatcgaggacccccaggaggccccggagaaaaaggagacaagggt
cacccaggaccccctggtcatccaggtaccgctggcttgatgggcacacctggtaacgat
ggacagcctggcccagtcggccccccggggtcccctggagaaaagggcaaagagggtctc
aaaggaatccagggaccaccgggtcttcccggcttgatcggtcagcctggaaaaatggga
aaagacggcagagcaggtgaaccaggagagcctggcaagcaaggtgagcctggaccacaa
ggaaactcggggctcaggggactcccgggctttaagggccacagaggggaatctggagct
ccaggacctaagggagaagatggaaagcccggatcatctggacgcgatggcaaacctggg
aaagagggctctacgggacctccgggcagagaagggctcagtggaccaagaggagagtcg
ggcaagccaggtgaaccagggccatcaggaaaatcaggtctccctggaactccgggtctt
agaggagacaagggagaggccggcaacccaggattaccgggctttagtgggccgaaaggc
cccgcgggtccacctggtccaatcggcccagaaggtaaacagggaatgccaggcagagtt
ggcgatcgtggcctcaaaggagagaagggagattcaggtgtgaagggagacaaaggacaa
tcaggagatccaggtatgcctggaaaccctggaccccctggcagaaagggccacacggga
atgatgggcatgtctggaccaccgggagaattaggagctccggggccacaaggatcttca
ggaaatcccggtattccaggccaaagaggagagtcggtgtcactggagcagatgagacga
ctcatccaggaggagctggcgaaacaattagatgccaaaatggcttacctcatggctcag
atccagccagcccacgtgaagagcacagctggccgtccaggacctccaggcccttcaggt
aaagacggcagttctggacgacctggcccccccggagagcctggtatgcccggacaaaat
ggcggagaaggatccaggggacccatgggccctaaaggtgacagaggaacaagaggagaa
aagggagaacctggcattggcgaaagaggagagcaaggaccctctggcccgataggtcca
gctggtctgcctggttatggtaaagacggaggcccagggcaagccggagcccagggagag
ccaggaaaccccggcccccacggtcaagctggacctccaggtcctaccggccagtgtgac
cccacccagtgtgcctactacgccagcctggcacacagaccccacaccaaaaatgtcaag
gggacttaa
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integrated database retrieval system
