KEGG   Cebidichthys violaceus (monkeyface prickleback): 137888254
Entry
137888254         CDS       T10484                                 
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
cve  Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03015  mRNA surveillance pathway
Brite
Transcription machinery [BR:cve03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     137888254 (pcf11)
Messenger RNA biogenesis [BR:cve03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     137888254 (pcf11)
SSDB
Other DBs
NCBI-GeneID: 137888254
NCBI-ProteinID: XP_068587712
LinkDB
Position
Unknown
AA seq 1596 aa
MDCLLLINGDVSIDRAAVGFPGSHAKMADKAAREDACREYQSSLEDLTFNSKPHINMLTI
LAEENLNFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFIC
VFEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNP
KFLKQSEDAPSPQPAPAQPTPTPPAPAAAPVPAPQPVPVPVPVAAVTAASQFTLTQEQLI
RQQLLAKQKQLLELQHKKIELELEQTKAQLAGGFVIPTATSASSQNVAAKTAGQTAPAVR
PWIPPATQTEAKPPTRDPRLNRTGPPSAPHPKEQPAGKRDGHAAAGSPVLTPEKPTRPDK
VKTPRKEASEEKQKSKSPSPMAKVLQSKNKVEAEIQKSADGTKKDPRLKKRPQDKSGEAK
DEELKEKKRCPDKKEREEAPRGVDHKGKLVNGSVGKHERVESTEKIEFKAGGNARTHARK
RTRSRSRSRSPAGASSSSPKRKDRRSARSSSVSPSHKPGKPRRVGPDHIKPGRGDRPAAP
KKNQPDSRRSKRPAEDRHSESRDSHSPRSHDGGGKEAKEAPHRWRSGWEENKHPKLPEDS
HVKPGPQRHKQYGTPTRPTTPRTPKHRLSVDANMQIPEVLNSASKKDLLRRASKRLESGE
ISQEDFLNMAHQIKHFFQYQEEKQQRSDGWDVDAVIAGDFPAKKLQLLSSPPSASTQPLP
PPPRPRDNMDAAELSYYEHKSKLRKTQVTHRAAGEEWEGEESPEEGEEAGPGTKTGGSGR
SAGHPKYGRAPRDRQGERRSKEHEEPRLIEEYNHGKEFPTLKSLPGLRFRRRADPREPKQ
SEVRFWSSVVSGSRSLQQGEREWNSPLTERPRFDEREEQKSGYDAPRGYGPPADSRLPDP
RRPEGPPPSGTVVLRNCPSPVGPEAALAAPRFERERLSPLHQKDPAEMSPIPRFESPNSE
HSDDGPLNLDLPVPPPKSILKAPPRAGPLSSVRQHSDSPGHTPPHDGGHPPPRYDGPGHM
GPARPHPPGWYEGPGRYDDSSRFEGPHHQGPGRFDGPPHHNMPERFEGPHMSHGLGRYDG
PPRPQGPGRFDGPIGQQGPGPGHFEGPMQRFDAPRRFENNMAPGPGSGPMGFQQRRFDGA
PNQMGPMRFEAPVQPGPRFDLPNVPPHQGGPPHYECSPGQQGPLRFAPQHNMQPPPMRPM
GPPIYDPQQNFSMNPQRFPEPMNPQFFNMQQAPPFSQPGPAPFYNPTAPSVVGMQQPGNM
LGNLNQSFLPQNPVPFGQIPQVAPPENHFGQVDVNDLLSKLISNGIIKPSQPDAAPSASA
EPTTTPVVAPPPVVVEEEEEEVEEEEEDDIPDLTSFNVDDLKQRLESVVTKLYSGNQCCL
CSMRFTTAQTDLYADHLDWHFRQNHAGKVAGKKITHRRWYYGLRDWVEFEEIADLEERAK
SHFFEKENEEEVQKSQQAAKEKEFQSVKATKDQVGELCEICQEPFETYWVEEEEDWFLKD
ALRVDDKNFHPACFEDYKNTSSYLDVTPSPNKVLTDHPLSAFIKREEEEEEEEEVTSCAV
AAAAAAAASVKQEVESEASELPAVKTEVLTDDQSEA
NT seq 4791 nt   +upstreamnt  +downstreamnt
atggactgcctgctgctgatcaatggtgacgttagtatcgatagagccgctgtaggtttt
cccgggtctcacgcaaagatggccgacaaagcagctcgagaagacgcgtgccgagagtac
cagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgaccatc
ctggccgaggaaaacctcaacttcgccaaggatatcgtcgctattattgaagcgcaaata
agcaaggccccatctgcagagaagcttccagttttgtacttagtggattccatagtgaag
aatgttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgt
gtctttgaaaaggtggatgaaaacaccaggaagagtttgttcaagctgcgctcgacgtgg
gacgacgtctttcctctgaagaagctgtacgcgctggacgtgcgggtcaactccgtggac
ccggcgtggcccatcaagccgctgccgcccaccgtcaacgccagcatccacgtcaacccc
aagttcttaaagcagtctgaagatgctccctctcctcagccggctcccgctcagccgaca
ccgactccgccggctccggcggcggcaccggtaccggctccccagccggtcccggtgccg
gtgccggtcgccgccgtcaccgccgccagccagttcaccctgacccaggagcagctgatc
cgacagcagctgctggccaaacagaagcagcttctggagcttcagcacaagaagatcgag
ctggagctggagcagaccaaagctcagctggccggagggtttgtgatcccgacagcgacc
tcggcttcgtctcagaacgtagcggcgaagaccgccggccaaactgcccccgcggtccga
ccgtggatccctcctgcgactcagacggaggccaagccgcccaccagagacccccggctg
aaccgcaccggacccccgtcggccccccatcccaaagaacagcccgccgggaagagagac
ggccacgcagcggcgggaagtccggtgctgacgcccgagaagcccacccggccggacaaa
gtgaaaaccccgaggaaagaggcgtcggaggagaagcagaagtccaaatctccgtctccg
atggccaaagtcctccagagtaaaaacaaggtggaggctgagatccagaagtcggcggac
ggcaccaagaaagacccccggctgaagaaacgcccgcaggacaagagcggcgaggccaaa
gacgaggagctgaaggagaagaagcgctgccccgacaagaaggagcgagaggaggcgccc
cggggagtcgaccacaaggggaagctggtcaacggctcggtgggcaaacacgagcgcgtc
gagtccacggagaagatcgagttcaaggccgggggcaacgcccgcacgcacgccaggaaa
cgcacccgctcgcggtccaggtcccgctcgcccgccggcgcctcctcctcctccccgaag
aggaaggacaggcggtcagcccggagcagctccgtgtcgccgtctcacaaacccggcaag
cccaggagggtcggaccagatcacatcaagccgggccgaggggaccggcccgccgcgccc
aagaagaaccagccggacagcaggaggtccaagaggcccgcggaggaccggcactccgag
tccagagactctcactcgccgaggagccacgacggaggcggcaaggaggccaaggaggct
cctcaccgctggaggagcggctgggaggagaacaaacatcccaagcttcccgaggactct
cacgtgaagccgggtccccagagacacaaacagtacgggaccccgacccggcccaccacc
ccccggaccccgaagcaccgcctcagcgtggacgccaacatgcagatacccgaagtcctc
aactcggcctccaagaaggacctgctgcggagggccagtaagcgtctggagagcggcgag
atctcccaggaggacttcctgaacatggcccaccagatcaaacacttcttccagtaccag
gaggagaagcagcagcgctccgacggctgggacgtcgacgccgtcatcgccggcgacttc
cccgccaagaagctgcagctgctgagctcgcctccctccgcgtccacgcagccgctgccg
ccaccgccgcggccccgagacaacatggacgccgccgagctgtcgtactacgagcacaag
tccaagctcaggaagacgcaggtcacccaccgggccgccggggaggagtgggagggcgag
gagagtccggaggagggcgaggaggcggggcccggcacgaagaccggcggcagcgggcga
agcgccggacacccgaaatacggccgggcgccacgggaccggcaaggtgagaggaggagc
aaagagcacgaggagccgcggctgatcgaggagtacaaccacgggaaagagttcccgact
ctgaagtctctaccgggccttcgcttcaggaggagggccgaccccagagagcccaagcag
tcagaggtcaggttctggagcagcgtggtgtcagggtctcgatcacttcagcagggtgag
agagagtggaactctccgctgacggagcggccgcgtttcgacgagcgcgaggagcagaag
agcggctacgacgctccgcggggttacggcccgcccgccgactcccggctccccgaccca
cggaggccagaggggcccccgccctcgggcaccgtggtcctcaggaactgtccgagtccg
gtcggccccgaggcggcgctggcggccccgaggttcgagcgcgagcgcctttcgcctctt
caccagaaggacccggcggagatgagcccgatccctcgcttcgagagccccaacagcgag
cactctgacgacgggcccctcaatctggacctccccgttcctccccccaaatccatcctg
aaggcgccgccccgcgcgggaccgctgtcttcggtccggcagcacagcgactccccggga
cacacgcctcctcacgacggaggacaccccccgccccggtacgacgggccgggacacatg
ggccccgccagaccgcaccctccagggtggtacgagggccccggtcgctacgatgactcg
tcccggttcgaggggcctcaccaccagggtcccggcaggttcgacggcccgcctcaccac
aacatgccggagaggttcgaaggacctcacatgtctcacggtttggggcggtacgacggt
ccgcctcgccctcagggccccgggaggtttgacggtccaattggtcagcaggggcccgga
ccgggtcacttcgagggccctatgcagcgtttcgacgcaccgcggcgcttcgagaacaac
atggctcccggtcctggctccggaccaatgggcttccagcagcggcgcttcgacggcgct
ccaaaccagatgggtccgatgaggttcgaggcccccgttcagccggggccccggtttgac
ttacccaacgtgcccccccatcagggcggacccccgcactacgagtgctcccccggccag
caggggcccctgaggttcgctccccaacacaacatgcagcccccccccatgaggccgatg
ggcccgcccatctacgacccccagcagaacttcagcatgaacccccagcggttcccggag
cccatgaaccctcagttcttcaacatgcagcaggccccgcccttcagccagcctggcccc
gcccccttctacaaccccaccgccccctctgttgtcggcatgcagcagccggggaacatg
ttggggaacctcaaccagtccttcctgcctcagaacccggtgcctttcggacagattccg
caggtcgcccccccagagaaccacttcggtcaggttgacgtcaacgacctgctgtccaaa
ctcatctccaacggcatcatcaagccctcgcagcccgacgccgcacccagcgccagcgcc
gaacccactaccacgcctgtggtagctccgcccccggtggtggtggaggaggaggaagag
gaggtggaggaagaggaggaggacgacatccccgacctcaccagcttcaacgtggacgac
ttgaaacagcgcttggagagcgtggtgaccaagctgtactcggggaaccagtgctgcctg
tgcagcatgaggttcaccacggctcagaccgacctgtacgcagaccacctggactggcac
ttcaggcagaaccacgccggcaaagtggccggcaagaagatcacgcaccgccgctggtac
tacggcctccgggactgggtcgagttcgaggagatcgccgaccttgaggagcgagccaag
agtcacttctttgagaaggagaacgaggaggaggtccagaagagccagcaggccgccaag
gagaaggagttccagagcgtgaaggccaccaaggaccaagtgggagagttgtgtgaaatc
tgtcaggagccctttgagacgtactgggtggaggaggaggaggactggttcctgaaggac
gccctccgggtggacgacaagaacttccatcccgcctgttttgaagattataaaaatacg
tcgtcgtatctcgacgtcacgccgtcgcccaacaaggtgctgacggaccacccgctgagc
gccttcattaagagggaggaggaggaggaggaggaggaggaggtcacttcctgtgctgtc
gctgctgctgctgccgccgccgcctcagtcaaacaggaagtagagtctgaggcgagcgag
ctccctgctgtgaagacggaggttttaacagacgatcaaagtgaagcgtaa

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