Cebidichthys violaceus (monkeyface prickleback): 137890743
Help
Entry
137890743 CDS
T10484
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03013
Nucleocytoplasmic transport
cve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137890743
03015 mRNA surveillance pathway
137890743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cve03019
]
137890743
Enzymes [BR:
cve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137890743
5.6.2.5 RNA 5'-3' helicase
137890743
Messenger RNA biogenesis [BR:
cve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137890743
mRNA cycle factors
Common to processing body (P body) and stress granule
137890743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
137890743
NCBI-ProteinID:
XP_068591036
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLLNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPSHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGASQGNGP
NSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttcccagaccctcaccttcctagacaccgaggaa
acggagttgctcggagcggacacccagggctccgagtacgacttcaccgacttcaccctt
cccagccagacgcagactcaaggccagacccagagccagctggacagccaggtaaacggt
cctgatgaaggtcttctcaacggtggagtggatgactccgtggccaaagccagccagctg
ttggcggagctcaactttgaggaggatgaagaagacacgtactacaccaaagacctgcct
ctgcacgcatgcagctactgcggtattcacgatccagcatgtgtggtgtactgcaatacc
agcaaaaagtggttctgtaatggacgcggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaggaagtgacgctgcataaagatgggccgctgggcgagacg
gtgctggagtgttacaactgtggctgtcgcaacgtcttcctcctgggcttcatcccggct
aaggccgattccgtggtggtgctactctgcaggcaaccctgtgccagccagagtagcctg
aaggacatcaactgggatagctcgcagtggcaaccacttatccaggaccgctgctttctg
tcctggctggtgaagatcccatcggagcaggagcagcttcgggcccgtcagattaccgcc
cagcagatcaacaagttggaggagctttggaaggacaaccccactgccaccttggaagac
ctggagaaacctggagtggatgaggagccccagcatgtgctgctgcgctatgaggatgcc
taccagtaccaaaacatctttggtcctttggtcaaactggaggccgactatgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgatgagatctgcttgcggtacaagggagacctggccccactgtggaaaggcatcggt
catgtcatcaaagtccctgacaactatggggatgaaattgccattgagttgcgtagcagt
gttggagcacctgtggaaatcccccacaacttccaagtcgattttgtgtggaagtccacg
tcctttgacaggatgcagagcgccctgaagacttttgcggtggacgagacctcagtgtct
ggttatatttaccacaaactgctgggccacgaggtagaggatgtcaccattaagtgccag
ctgccaaagcgcttcactgcccagggcctccccgacctcaatcactcccaggtgtacgct
gtgaagacggtgctgcagaggcctctgagtctgatccaaggtcctccgggcactgggaag
actgtcacctctgccaccatcgtctaccacctgtcccgacaagggaacggaccagttctg
gtgtgtgctcccagtaacattgccgtggatcagttgacggagaagattgacaagactgga
ctgaaggttgtcaggctttgtgctaagagtcgggaggccattgagtcaccggtatccttc
ctggctctgcacaaccagatcagcaacatggacagtatgccggagcttcagaaactacag
cagctgaaggatgagaccggtgagctgtcatctgctgatgagaagcgctacagggctctg
aaacgcacagctgagagggagctgctcatgaatgctgacgttatctgttgtacctgcgtt
ggggctggagatcctcgtctggccaagatgcagttccgctccatcctgattgatgaaagc
acccaggccactgagccagagtgtatggtgcctgtggtgctgggagccaagcagctaatt
ctggtgggtgatcactgccagctgggtcctgtggtgatgtgtaagaaagcagccaaggca
ggtctgtcccagtccctgtttgaacgcttagtggttctggggatccggccaatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccctccaacatcttctatgag
ggctccctgcagaatggtgtcactgcagctgaccgcatcaagaaaggcttcgacttccag
tggccacagccagacaagcccatgttcttctacgtgactcagggtcaggaggagattgcc
agctctggaacctcctaccttaacaggacggaggccgcaaacgtggagaagatcaccacc
aggctgctgaaggctggagccaaacccgaccagattggcatcatcaccccgtacgagggt
cagcgttcctacctggtccagtacatgcagttcagcggctccctgcacaccaagctctac
cagcaagtggaaattgccagcgtagacgcctttcagggcagagagaaggacttcatcatc
ctttcttgtgttcgtgccaatgagcatcagggaatcggctttctgaatgacccacgtcgt
ctaaacgtggcgctgaccagagccaagtacggtgtgatcattgtgggaaaccccaaggcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaggtcctc
gtggagggtcccctgaacaacctgagggagagcctcatgcagttcagcaagccccgcaaa
ctggtcaacaccatcaaccctgggggacgttttatgagcactgcgatgtacgatgcccgt
gaggccctcatccccggctctgcttacgaccgcagcaatgctgccggacgtccgtccaac
atgtactttcaaactcacgaccagatcgggatgattggggcaggccccagtcatatggcc
gctatgaatattcccattcccttcaacctggtgatgccaccaatgcctccgccaagctac
ctgggtcagaccaacggccctgctgcaggtcgtggagctatgaagggtaagcctgggcgt
ggcgggcggcagagggtcagaggatcagcacaccagggtgccagtcagggtaacggacca
aacagccaggccagccaggacggggcctcccagcccttctcccaggggccgctgacacag
ggctacatctccatgagccaaccctcccagatgagccagcctggcctctcccagccggag
ctgtcccaggacagctacctgggcgatgagttcaagtcccaaatcgacgtggctttgtcc
caggactcaacttaccagggtgaacgtgcataccagcatggtggggtgactggactgtca
cagtactaa
DBGET
integrated database retrieval system
