Cebidichthys violaceus (monkeyface prickleback): 137892491
Help
Entry
137892491 CDS
T10484
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03008
Ribosome biogenesis in eukaryotes
cve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
137892491 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
137892491 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cve03019
]
137892491 (xrn1)
03009 Ribosome biogenesis [BR:
cve03009
]
137892491 (xrn1)
03016 Transfer RNA biogenesis [BR:
cve03016
]
137892491 (xrn1)
03036 Chromosome and associated proteins [BR:
cve03036
]
137892491 (xrn1)
Messenger RNA biogenesis [BR:
cve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
137892491 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
137892491 (xrn1)
Ribosome biogenesis [BR:
cve03009
]
Eukaryotic type
Pre-60S particles
RNases
137892491 (xrn1)
Transfer RNA biogenesis [BR:
cve03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
137892491 (xrn1)
Chromosome and associated proteins [BR:
cve03036
]
Eukaryotic type
Gene silencing
piRNA pathway
137892491 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
137892491
NCBI-ProteinID:
XP_068593767
LinkDB
All DBs
Position
Unknown
AA seq
1702 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAVDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKLWQNVNVYLSGHETPGEGEHK
IMEFIRSENTEPGHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLMREYIDYEFSELRNQIGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHISHDALPLLYKTYIRALPIMGGYLNENGHLNLRNFEKYMEKLAEFDREHFSDIFVDLK
WFESKVGNKYLNEAAGLAAEKEAASKDSNEKDSTSTERVIGEGKGGVGDDEEEEDMFETE
FRQYKRTYYMTKMGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAPFL
SDIKNISGLKLTFELEKPFMPFQQLLAVLPAASKELLPESYRHLMTSENSPIIEYYPLDF
KTDLNGKQQEWEAVVLIPFIDERCLLAAMEPFNDKMTKEEKARNRHIECAVYSYDPENDC
LYASNLPQLFPDIVHCHVRKTDIPMDAWQVRLDHVSRRFDRSALYFCGFPTLQHIKHKFF
KKKSGVVVFQQSSRGENMMLNILPSQEGEPVCDDVAAQVLGKSVFVNWPHLEEARIIAVS
DGDVKFCLEEPPSVQRVYDRPSTPPPTKVTCLSDKEQKDWVKDVQGITEHFVKRKGIVVN
DTSVVLYGQLLTGRKYVPKADGVVDLEKQWAKQVLPFAFQTVVKDIEAFYSFLTCFKSLD
ELFPPATAVFMVGNPYYGAVGEVQDSSDVIKDGRVRVVFNVPHEPQLEPLIQNQHKYCVK
YSPGYVLASRLGVTSYLVSRFSGSIFIGRGSKKNPCGEQKANVGLNLKFNKKNEEVPGYT
KRTEKEWLYSAAVEELLAEYLDRFSEVFNLVSRNSHDDVFYEDDIWPAEDQNGAEKVAEI
TSWLRGHPVSSIGRTSCDLQVLDSAIVERIEEAVEKAKVKKSTKKVRVTVKPHLLFRPLE
QQQGVVPDPDSEYRLFDRVINTRESFSVPLGLRGTVIGIKGAEREAEVLYEVLFDEEFAG
GLNIRCASPRGYRLPPCALINLSHGVRVDQTSHKLTAIVKPQPTTAANFTSQRQPPGLNH
SPRSPFTPTQHNNKHGVVKPASQGNRSSPSKGPIQKQQAKEYSNVWQSLQNSGPPLKPPA
HWHNEGLVQQGKNQQSNKATPVTGIRLLKKNEDANSLFPPQNTANKASSEFEELIASLKI
STGSQQTPPPPAPPPAPSSQSDGPLSPQSFAMKGTLMLKEMLKIDGAGTGSPSSQEAADT
GAQQHNRRRSTKKLAANMNAPHGDSAVMAPPPLAGSASLSSAVLTSKVSELACVCVGLGM
APPDFCYIGSRQDRAVVCQVKLSNGLMVHGPQCQSENDAKEKAAFFALQRLNSVGSGFPL
PPPLYPGMGQIRPPPLGPMTPIFNQQGGLLLPQGFGPAPLWGMPLPPPHHQNQPFFGPAG
TFPGAARPPQPAALPIGSHNQFIPLQVTKKRVSANKKSQDTREFYSAAHTVSRNQSQRGQ
NQPFSHSLAQGEPQGGQPHQYAVNSNHSPGSLGLADAVSTTAVPHTPPRQNIPATGHTPG
SSSSKRKHRKLAVNFEAAKVSE
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaagttctaccgatggatttcggagcgctatccttgtctcagtgaagtt
gtcaaggaacaccagattccagagtttgacaatctctatctggacatgaacgggatcatc
caccagtgttcccacccgaacgacgaggacgtccactttcgcatctccgaggagaagatc
tttgcagacatcttccactacctggaggtgctcttcaggatcatcaagcctcgcaaggtc
ttcttcatggcggtggacggcgtggcaccgagagcaaagatgaaccagcagagaggacgg
aggttcagatcggccaaagaagcagaggacaagataaagaaagctgtggataaaggagag
gtgcttcccacagaggctcgcttcgactccaactgcatcactcctggcactgacttcatg
gctcggctccaggagcagctcaagtattttgtccacaacaagctctccaccgacaagctg
tggcagaacgtcaacgtctacctgtcgggtcatgagacgccgggggagggagaacacaag
atcatggagttcattcgctccgagaacaccgagccgggtcacgaccccaacacccgacac
tgcctgtacggcctggatgctgacctgatcatgttgggtttgaccagccacgagccgaac
ttctccctgctcagagaagaggtccgcttcggaggaaagaaaaaccagaaaaggataacg
gctccagaggagacaacttttcacttgctccacttgtctctgatgagggagtacatcgac
tacgagttctctgagctgaggaatcagatcggttctgattacgatttggagcgaatcata
gacgactggatcttaatgggcttcttggtggggaacgatttcatccctcacctcccccac
cttcacatcagtcacgatgctctgccgctgctctacaagacctacatcagggctctgccc
ataatgggagggtatctgaatgagaacggccacctgaacctgagaaactttgagaagtac
atggagaagcttgctgagttcgaccgggaacatttcagcgacatctttgtggacctgaag
tggtttgagagcaaagttggtaacaagtatctgaacgaggcggccggcctggcagcagag
aaggaagcagccagcaaagactccaacgagaaggattctacctcgacagaaagagtgatt
ggagaaggaaaaggaggagtaggcgacgatgaggaagaggaggatatgtttgaaacggag
ttcagacagtacaagcgcacctactatatgaccaagatgggcgtggatgtggtgtctgat
gagtttctagccaagcaggccaagtgttacgtggaaggcatccagtggatcctgcactac
tattaccacggggtccagtcctggagctggtactacccctaccactacgcccccttcctg
tccgacatcaagaacatatcggggttaaagttgacctttgagcttgagaaacccttcatg
cccttccagcagctgctggccgtcctgcctgctgccagcaaggagctgctgcctgagagc
tacaggcacctgatgaccagtgaaaactcccccatcatcgagtactacccactggacttt
aagacagacctcaatggcaagcagcaggaatgggaggctgtggttcttattccgttcata
gatgagaggtgcctgctagcagccatggagccctttaatgacaagatgactaaagaagag
aaggccaggaaccgtcacatagaatgtgccgtctactcgtacgacccggagaacgactgt
ttgtacgcctccaacctgcctcagctgttccccgacatcgtccactgccacgtcaggaaa
acggacatccccatggacgcctggcaggtacgactggaccacgtcagcagacgcttcgac
cgctcggctctgtacttctgtggcttccccacactgcagcacatcaaacacaagtttttc
aagaagaagagtggcgtggtcgtgttccagcagagcagcagaggggagaacatgatgctg
aacatcctccccagccaagaaggagagccggtctgtgacgacgttgctgctcaggttctg
gggaagtcggtgttcgtcaactggcctcatctagaggaagctcgcatcattgcggtgtca
gacggagacgtcaagttttgtctggaggaaccgcccagtgtccaaagagtgtacgacagg
ccctccactcccccccccaccaaggtcacctgtctgtctgacaaggagcagaaggactgg
gtgaaggacgtgcagggaatcactgaacatttcgtgaagaggaaaggcatcgtggtgaat
gacacgtcggtggttctgtacggccagctgctgacgggaaggaaatacgtccccaaagcc
gacggggtggtggaccttgagaagcagtgggccaagcaggtcctccccttcgccttccag
accgtggttaaggacatcgaggccttctactcgtttctgacctgcttcaagagcttagac
gagctgtttcctccagcgaccgccgtcttcatggtggggaacccgtactacggcgccgtg
ggcgaggttcaggactcgagcgacgtcattaaagacggccgggtgcgagtggtcttcaac
gtgccgcacgagccgcagctggagcccctgatccagaaccagcacaagtactgcgtgaag
tacagtcccggctacgttctggcgtctcgtctcggcgtcaccagctacctcgtgtcccgc
ttctcaggaagcatcttcatcggcagaggctctaagaagaacccctgtggggagcagaaa
gctaacgttggcctcaacctgaagttcaacaagaagaacgaggaggttcccggatacacg
aagagaaccgagaaggagtggctctactctgctgctgtggaggaactgctggccgaatac
cttgacagattttctgaagtattcaacttagtgtccagaaacagtcatgatgatgttttc
tatgaagacgacatctggcctgcagaggaccagaatggggcggagaaggttgccgagatc
acctcgtggttgagaggtcacccggtgagctccatcggcaggacgtcatgtgacctgcag
gtgctggactctgccatcgtggagaggatcgaggaggcggtggagaaagccaaggtgaag
aagagcaccaagaaggtccgtgtgacggtgaagcctcatctcctcttcaggcccttggag
cagcagcagggagtggttccagacccggattcagagtatcgcctgttcgacagagtcatc
aacaccagggagagcttcagcgtcccgctggggctcaggggaaccgtcatcggcatcaaa
ggagcggagcgcgaggcagaggttctctacgaagtgctctttgacgaagaatttgctgga
ggtctcaacatcaggtgtgcgtcccctcgtggttaccgcctccccccctgcgctctcatt
aacctttcccacggagtgcgagtggatcaaacctcccacaaactcaccgccatcgtcaaa
cctcagccgaccacggccgccaacttcacctcccaacggcagccgcccggcctgaaccac
tctccgcgttcccccttcacaccgacgcagcataacaacaaacacggtgtggtgaagcca
gcctcccagggcaacaggagctctccctctaagggtcccatccagaaacaacaggccaag
gagtacagtaacgtgtggcagtctctgcagaactctggtcctcctctcaagcctcctgct
cattggcacaatgaaggacttgtccaacaggggaagaaccagcagtccaacaaagccacc
ccagttaccggaatcagactgttgaagaaaaatgaagacgccaactcccttttcccccca
cagaacacagccaataaggcttcttctgagtttgaggagctgatagccagtctgaagatc
tccacagggagccagcagactcctccccctcctgctcctccaccagcacccagcagccaa
tcagacggcccgctgtccccgcagtccttcgccatgaagggaaccctgatgctgaaggag
atgctaaagattgacggcgctggaacaggaagtccttcttcccaggaggccgctgacacc
ggcgcccagcagcacaacaggcgccggtccaccaagaaactagcagcaaacatgaacgcc
ccccacggtgactcagctgtgatggctccccccccattggccggctctgccagcctctcc
agcgccgtgttgaccagtaaggtgtcggagctggcctgtgtctgcgtggggctgggaatg
gctccgcccgacttctgctacataggcagtagacaggaccgggcagtcgtgtgtcaggtg
aagctgtccaacgggttgatggtccacggtccacagtgccaatcagaaaacgacgccaag
gagaaagctgccttctttgccctccagagactgaactcggtggggtctggcttccccctc
ccccctcctctctaccctggaatgggtcagatccgacccccacccttaggacccatgacc
cccatcttcaaccaacaaggtggtttgctgttgccccagggtttcggccccgcccccctg
tgggggatgcctctgcctcctccccaccaccagaaccagccgttcttcggaccagcggga
accttccccggtgccgcccgccccccccagcctgcagcgctgcccatcggctcacacaac
cagtttattccgttacaggtgacgaagaagcgagtctcggccaacaaaaagagccaagac
actcgagagttttacagcgccgcccacaccgtgtccaggaaccaatctcagagaggccag
aaccagcccttcagccattcgctggctcagggggaaccccagggcggccagccgcaccag
tacgccgtcaacagcaaccactccccggggagcctcggtctggcggacgccgtttccacg
acggcggtgccgcacacgccccctcggcaaaacatcccagcgacgggccacacccccggc
tcctcctcctccaagaggaagcacagaaagctggctgtcaactttgaggcggctaaagtc
tctgagtga
DBGET
integrated database retrieval system
